Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_I16
(763 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z11115-2|CAA77450.1| 599|Caenorhabditis elegans Hypothetical pr... 89 2e-18
U00035-1|ABL01529.1| 155|Caenorhabditis elegans Hypothetical pr... 32 0.39
U23486-5|AAL38958.2| 326|Caenorhabditis elegans Serpentine rece... 32 0.51
U20861-8|AAA62297.3| 372|Caenorhabditis elegans Hypothetical pr... 31 1.2
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 29 4.8
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 29 4.8
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 29 4.8
AF025471-1|AAB71058.1| 379|Caenorhabditis elegans Hypothetical ... 28 8.3
>Z11115-2|CAA77450.1| 599|Caenorhabditis elegans Hypothetical
protein ZK637.3 protein.
Length = 599
Score = 89.4 bits (212), Expect = 2e-18
Identities = 55/179 (30%), Positives = 97/179 (54%), Gaps = 7/179 (3%)
Frame = -3
Query: 749 DTNFIKVIVVTGLTNAIVPILXTTLYKRKATFGTNLPGPKIGYNTWSQEGTYRTGVCAQL 570
DT F+KV V TG+ + + ++ G ++ G V Q+
Sbjct: 422 DTTFLKVQVFTGVCSD-----RCNPKSNEIGSSISMTGACASFSMTDGWGGSTQSVACQV 476
Query: 569 PQSAYFALQLPYSIFGLDRTPNFVDTLNVGLSGYS---KSW----TQIIPNSQIVVIPVP 411
P S+ AL LP+ ++GL R+PNFVD LN+ + Y+ + W QI+PNS+I+V+P P
Sbjct: 477 PASSNRALYLPFLLYGLGRSPNFVDELNIAIPKYADRKEDWKHSLKQIVPNSRIIVLP-P 535
Query: 410 PYDPSQWKAQLFVTPSKVILKSVFVLTAIIVIITGCVLYLHWKERNDRQDIIEIDDQTY 234
W ++L+VTPS +I++S+ V+ + ++ V++LH++E+ ++D E Q++
Sbjct: 536 SDQYPHWTSRLYVTPSALIVQSLAVIALVCCMLLMVVVFLHYREK--KEDRYERQQQSH 592
>U00035-1|ABL01529.1| 155|Caenorhabditis elegans Hypothetical
protein R01H2.7 protein.
Length = 155
Score = 32.3 bits (70), Expect = 0.39
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Frame = -3
Query: 413 PPYDPSQWKA-QLFVTPSKVILKSVFVLTAIIVIITGCVLYLHWKE----RNDRQDII 255
PP P W+ +LF +IL VLTA++VI GC L + + R+D +D++
Sbjct: 9 PPSAPPTWRFDELFSLTGLIIL--CIVLTAVVVIFFGCYLMMRFMHKALARDDSKDML 64
>U23486-5|AAL38958.2| 326|Caenorhabditis elegans Serpentine
receptor, class x protein114 protein.
Length = 326
Score = 31.9 bits (69), Expect = 0.51
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Frame = -3
Query: 557 YFALQLPYSIFGLDRTPNFVDTLNVGLSGYSKSWTQIIPNSQIVVIP---VPPYDPSQWK 387
+ A +P + P+F + L + G+ +WT P +QI++ + Y P +
Sbjct: 62 FIAWPVPVTYLNFYFLPSFYNVLAGQIIGWF-AWTYS-PTTQILLAGNRLMAVYFPKAYH 119
Query: 386 AQLFVTPSKVILKSVFVLTAIIVI 315
A+ +P++VIL +FVL+ I I
Sbjct: 120 AKYSCSPNRVILTGIFVLSIFISI 143
>U20861-8|AAA62297.3| 372|Caenorhabditis elegans Hypothetical
protein C28H8.9a protein.
Length = 372
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 399 ISMESTTICYT*QSDSQKCFCTNCNYSYH 313
+ +S TIC T ++D + FC +C+ YH
Sbjct: 309 LECKSCTICGTSENDDKLLFCDDCDRGYH 337
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = -2
Query: 195 GHFH-SILWLTVGSEFIWPKKTKLVETCLQXRXC-KCL 88
GHF +W V +F WP+ VE C+ R C KCL
Sbjct: 1565 GHFGIKKMWRMVHRKFYWPQMRVCVENCV--RTCAKCL 1600
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = -2
Query: 195 GHFH-SILWLTVGSEFIWPKKTKLVETCLQXRXC-KCL 88
GHF +W V +F WP+ VE C+ R C KCL
Sbjct: 1468 GHFGIKKMWRMVHRKFYWPQMRVCVENCV--RTCAKCL 1503
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = -2
Query: 195 GHFH-SILWLTVGSEFIWPKKTKLVETCLQXRXC-KCL 88
GHF +W V +F WP+ VE C+ R C KCL
Sbjct: 1479 GHFGIKKMWRMVHRKFYWPQMRVCVENCV--RTCAKCL 1514
>AF025471-1|AAB71058.1| 379|Caenorhabditis elegans Hypothetical
protein R52.3 protein.
Length = 379
Score = 27.9 bits (59), Expect = 8.3
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Frame = +3
Query: 339 KNTFENHFARCNK*LCFPLRWIIRWHRYYNYLRIWNNLSPTFG---IAR*PNI*CIHKV- 506
+N F F RC K LC +W I Y + N S FG + PNI H +
Sbjct: 260 RNEFSGLFIRCEKQLCKSRKWSIE-TEYQLKIVSPNGRSELFGGTYVFDNPNIYGWHIIR 318
Query: 507 WCSVKTKY 530
W S++ +Y
Sbjct: 319 WSSLEDRY 326
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,426,540
Number of Sequences: 27780
Number of extensions: 380309
Number of successful extensions: 955
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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