Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_I15
(783 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC902.05c |idh2|glu2|isocitrate dehydrogenase |Schizosaccharom... 217 2e-57
SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase |Schizosaccharom... 159 4e-40
SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces ... 151 1e-37
SPBC1A4.02c |leu1|SPBC1E8.07c|3-isopropylmalate dehydrogenase Le... 95 1e-20
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom... 41 2e-04
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch... 30 0.33
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar... 30 0.43
SPAC513.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 29 0.57
SPCC188.05 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 29 0.57
SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyc... 27 2.3
SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase family|... 27 3.0
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 4.0
SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyc... 26 5.3
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 26 7.0
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe... 26 7.0
>SPBC902.05c |idh2|glu2|isocitrate dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 217 bits (529), Expect = 2e-57
Identities = 101/167 (60%), Positives = 130/167 (77%), Gaps = 3/167 (1%)
Frame = -3
Query: 781 VHKXNIMRMSDGLFLRCCRELATKYPDIKFEERYLDTVCLNMVQDPSKFD--VLVMPNLY 608
VHK IMRM+DGLFL C +ELA +YPDI+ E LD CL +V DP ++ V+VMPNLY
Sbjct: 211 VHKATIMRMADGLFLECAKELAPEYPDIELREEILDNACLKIVTDPVPYNNTVMVMPNLY 270
Query: 607 GDIMSDMCSGLVGGLGLTPSGNIGKNGALFESVHGTAPDIAGKDMANPTALLLSAIMMLR 428
GDI+SDMC+GL+GGLGLTPSGNIG ++FE+VHGTAPDIAGK +ANPTALLLS++MML+
Sbjct: 271 GDIVSDMCAGLIGGLGLTPSGNIGNQASIFEAVHGTAPDIAGKGLANPTALLLSSVMMLK 330
Query: 427 HLQLNDHADLVQNACYEVLREG-RALTGDLGGTAKCSEFTNAIISKL 290
H+ LND+A +++A ++ L A T DLGG + ++T+AIISKL
Sbjct: 331 HMNLNDYAKRIESAIFDTLANNPDARTKDLGGKSNNVQYTDAIISKL 377
>SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 159 bits (386), Expect = 4e-40
Identities = 78/165 (47%), Positives = 108/165 (65%), Gaps = 1/165 (0%)
Frame = -3
Query: 781 VHKXNIMRMSDGLFLRCCRELATKYPDIKFEERYLDTVCLNMVQDPSKFDVLVMPNLYGD 602
+HK NIM+++DGLF R ++A Y I ++ +D + V P +FDVLVMPNLYG
Sbjct: 189 IHKANIMKLADGLFRRTFYDVANGYDAITPKDLIVDNASMQAVSRPQQFDVLVMPNLYGS 248
Query: 601 IMSDMCSGLVGGLGLTPSGNIGKNGALFE-SVHGTAPDIAGKDMANPTALLLSAIMMLRH 425
I+S++ S LVGG G+ P N G++ ALFE I G+ ANPTA +LSA +MLRH
Sbjct: 249 ILSNIGSALVGGPGVIPGANFGRDYALFEPGCRHVGLSITGRGEANPTAAILSACLMLRH 308
Query: 424 LQLNDHADLVQNACYEVLREGRALTGDLGGTAKCSEFTNAIISKL 290
L L D+ADL+ A Y V+ EG+ LT DLGG+A +FT+AI+ ++
Sbjct: 309 LGLKDYADLINAATYSVIEEGKTLTKDLGGSASTGDFTHAILERM 353
>SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 362
Score = 151 bits (365), Expect = 1e-37
Identities = 72/168 (42%), Positives = 106/168 (63%), Gaps = 3/168 (1%)
Frame = -3
Query: 781 VHKXNIMRMSDGLFLRCCRE---LATKYPDIKFEERYLDTVCLNMVQDPSKFDVLVMPNL 611
+HK N+M ++DGLF CR L Y I +E+ +D++ + ++P FDV+V PNL
Sbjct: 194 IHKSNVMSVTDGLFRESCRHAQSLDPSYASINVDEQIVDSMVYRLFREPECFDVVVAPNL 253
Query: 610 YGDIMSDMCSGLVGGLGLTPSGNIGKNGALFESVHGTAPDIAGKDMANPTALLLSAIMML 431
YGDI+SD + L+G LGL PS N+G N + E VHG+APDIAG+ +ANP A S +ML
Sbjct: 254 YGDILSDGAASLIGSLGLVPSANVGDNFVMSEPVHGSAPDIAGRGIANPVATFRSVALML 313
Query: 430 RHLQLNDHADLVQNACYEVLREGRALTGDLGGTAKCSEFTNAIISKLN 287
+ D A + A +VL EG+ LT DLGG + +E T+A+++ ++
Sbjct: 314 EFMGHQDAAADIYTAVDKVLTEGKVLTPDLGGKSGTNEITDAVLANIH 361
>SPBC1A4.02c |leu1|SPBC1E8.07c|3-isopropylmalate dehydrogenase
Leu1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 371
Score = 94.7 bits (225), Expect = 1e-20
Identities = 58/156 (37%), Positives = 92/156 (58%), Gaps = 15/156 (9%)
Frame = -3
Query: 712 KYPDIKFEERYLDTVCLNMVQDPSKFD-VLVMPNLYGDIMSDMCSGLVGGLGLTPS---- 548
+YP + + + +D+ + +V+ P + V++ NL+GDI+SD S + G LGL PS
Sbjct: 212 EYPHLTLKNQLIDSAAMLLVKSPRTLNGVVLTDNLFGDIISDEASVIPGSLGLLPSASLS 271
Query: 547 GNIGKNG----ALFESVHGTAPDIAGKDMANPTALLLSAIMMLRH-LQLNDHADLVQNAC 383
G +GK+ L E +HG+APDIAGK + NP +LSA ++LR+ L A+ ++ A
Sbjct: 272 GVVGKSEEKVHCLVEPIHGSAPDIAGKGIVNPVGTILSASLLLRYGLNAPKEAEAIEAAV 331
Query: 382 YEVLRE----GRAL-TGDLGGTAKCSEFTNAIISKL 290
+VL + GR L T DLGG A ++ T A++ +L
Sbjct: 332 RKVLDDTSIGGRGLYTRDLGGEASTADITKAVVEEL 367
>SPAC6G10.08 |idp1||isocitrate dehydrogenase
Idp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 418
Score = 40.7 bits (91), Expect = 2e-04
Identities = 34/101 (33%), Positives = 45/101 (44%), Gaps = 9/101 (8%)
Frame = -3
Query: 775 KXNIMRMSDGLFLRCCRELATKYPDIKFEE-------RYLDTVCLNMVQDPSKFDVLVMP 617
K I++ DG F +E+ KFEE R +D + ++ F V
Sbjct: 222 KNTILKKYDGRFKDTFQEVYESDYKQKFEELGLWYQHRLIDDMVAQAIKSNGGF-VWACK 280
Query: 616 NLYGDIMSDMCSGLVGGLGLTPSGNIGKNGALFES--VHGT 500
N GD+MSD+ + G LGL S I NG FES HGT
Sbjct: 281 NYDGDVMSDVVAQAYGSLGLMTSVLIHPNGRTFESEAAHGT 321
>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 463
Score = 30.3 bits (65), Expect = 0.33
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +3
Query: 432 SIIIADNSRAVGLAMSLPAISGAVPCTDSKSAPFLPMLPEGVRPSPPTSPE-HMSDMMSP 608
S ++A ++ + + + A S + T S SA P+ P G+R T PE + ++ SP
Sbjct: 276 SSVVAYTTKCIVVPVITTAASQSEAATPSPSAAVYPLFPHGIRLIDSTKPEANSGNVYSP 335
>SPAC23A1.04c |mnl1||alpha mannosidase-like
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 787
Score = 29.9 bits (64), Expect = 0.43
Identities = 12/29 (41%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = +2
Query: 647 VLHHVEADR-VQVSLFELDVRVLGGELAT 730
V+HH+ +R +V +FE +R+LGG L++
Sbjct: 114 VIHHINFERDTKVQVFEATIRILGGLLSS 142
>SPAC513.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 100
Score = 29.5 bits (63), Expect = 0.57
Identities = 8/13 (61%), Positives = 13/13 (100%)
Frame = -3
Query: 58 SNHHHSYLYHCQH 20
+NH+H++LYHCQ+
Sbjct: 78 NNHNHAFLYHCQY 90
>SPCC188.05 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 88
Score = 29.5 bits (63), Expect = 0.57
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 188 RCVTVTPKYKRIIIEFKLLYSI 123
RCV + P+YK+ +I +YSI
Sbjct: 5 RCVLIKPEYKKFLIHVNFIYSI 26
>SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 413
Score = 27.5 bits (58), Expect = 2.3
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +3
Query: 591 SDMMSPYKLGITSTSNLEGSCTMLRQTVSRYRSSNLMSGYLVASSRQ 731
+ + P++L L+ +CTM R T R+ S G+ ASSR+
Sbjct: 204 NSLSEPFRLSKPKLDFLKHACTMFRGT-HRFHSYTTEKGFSDASSRR 249
>SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 336
Score = 27.1 bits (57), Expect = 3.0
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 312 VNSLHFAVPPRSPVKALPSRNTS*QAFW 395
+N + PP P+K + S NTS Q FW
Sbjct: 193 INPPYVYGPPIHPMKNMDSLNTSNQIFW 220
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 4.0
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +3
Query: 477 SLPAISGAVPCTDSKSAPFLPMLPEGVRPSPPTSP 581
SLP + A P SAP P LP G+ +PP P
Sbjct: 438 SLPMGAPAAPPLPP-SAPIAPPLPAGMPAAPPLPP 471
>SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 581
Score = 26.2 bits (55), Expect = 5.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 226 SLNKYFFHEYSNTGTAPIQPNSV 294
S NK F+E+ N T P + NSV
Sbjct: 216 STNKNLFYEFPNGTTEPFEKNSV 238
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1018
Score = 25.8 bits (54), Expect = 7.0
Identities = 23/83 (27%), Positives = 38/83 (45%)
Frame = +3
Query: 498 AVPCTDSKSAPFLPMLPEGVRPSPPTSPEHMSDMMSPYKLGITSTSNLEGSCTMLRQTVS 677
A+P T S AP +L V SP + +S ++ P K +++ +L S + +
Sbjct: 266 ALPSTTS-DAPS-SLLNTNVSSSPSKFRKFLSSVI-PAKTDLSAKESLTSSTRLSTSYKT 322
Query: 678 RYRSSNLMSGYLVASSRQQRRKR 746
R RSS + +S + RKR
Sbjct: 323 RKRSSGVAFSSETVTSSSKERKR 345
>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 697
Score = 25.8 bits (54), Expect = 7.0
Identities = 22/86 (25%), Positives = 35/86 (40%)
Frame = +3
Query: 453 SRAVGLAMSLPAISGAVPCTDSKSAPFLPMLPEGVRPSPPTSPEHMSDMMSPYKLGITST 632
S+ L++SL S +PC + P+L E S P + + + M+PY+ +
Sbjct: 290 SKLRSLSLSLQKTSIQLPCPEPNFLFNQPILTELFDGSLPENTQSDTTSMAPYQRSL-QL 348
Query: 633 SNLEGSCTMLRQTVSRYRSSNLMSGY 710
+ GS L S L GY
Sbjct: 349 EFMTGSLIRLSNLWSEISRWALCGGY 374
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,064,547
Number of Sequences: 5004
Number of extensions: 62223
Number of successful extensions: 182
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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