Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_I13
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0178 + 17594062-17595576 60 2e-09
01_01_0938 + 7400843-7401522,7402192-7403065 31 0.67
09_04_0682 - 19429007-19429426 30 1.5
11_06_0059 + 19691588-19691697,19692281-19692348,19692400-196925... 30 2.0
03_02_0338 + 7614199-7614450,7614518-7614703,7614815-7614927,761... 30 2.0
03_02_0254 + 6862762-6863663,6863994-6864241,6864323-6864465,686... 29 4.7
08_02_0593 + 19078264-19078609,19078724-19082256 28 6.2
05_03_0434 - 13980477-13980937,13981449-13981518 28 6.2
12_01_0671 - 5702051-5702159,5702493-5703216,5703910-5704476,570... 28 8.2
11_06_0490 - 24293218-24293373,24293454-24293521,24293845-242939... 28 8.2
11_06_0130 - 20408835-20411771 28 8.2
05_04_0035 + 17378541-17381276 28 8.2
01_06_0425 + 29264714-29266135 28 8.2
01_05_0368 + 21434398-21434415,21434521-21434553,21437074-21437391 28 8.2
01_01_0012 + 71903-72935,73468-73981,74619-76008 28 8.2
>06_03_0178 + 17594062-17595576
Length = 504
Score = 60.1 bits (139), Expect = 2e-09
Identities = 49/155 (31%), Positives = 69/155 (44%), Gaps = 9/155 (5%)
Frame = -1
Query: 589 YPILQTPSPRPGEGASPLMTWGHIEGTPFRLDGGDTPLPAAGAGVA-YKMLEGGARERIA 413
Y ++TPSP PG SP MTWG I+GTP RLD +TP + G+ A +K+ AR+ A
Sbjct: 346 YSFVRTPSPAPGVDESPFMTWGEIDGTPLRLDPEETPGGSGGSDRAHFKIPPPPARDVKA 405
Query: 412 LQLAEQLAKXXXXXXXXXXXXXXXXXXXXXRLA--SMSPAARKLA----AKHLLTPRLKL 251
L+ A+ + + SPAA+K AK T L
Sbjct: 406 HLLSRDAARKIKERTKMFHKPPLPSPVRGGSASPRTFSPAAQKFVRNAIAKSSRTIDESL 465
Query: 250 TPNDMGILSHAATPKRTPTRRPLVA--TPSTNKNT 152
+ G A TPK +R P + +PST + +
Sbjct: 466 RASYRGTTPSATTPKTRFSRDPSLGSRSPSTRQGS 500
>01_01_0938 + 7400843-7401522,7402192-7403065
Length = 517
Score = 31.5 bits (68), Expect = 0.67
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -1
Query: 559 PGEGASPLMTWGHIEGTPFRL-DGGDTPLPAAGAGVAYKMLEG 434
P +G+S T ++ P R DGG P PAA +GVA ++ G
Sbjct: 396 PFKGSSNRATLCNVVEQPLRFPDGGAFPAPAAASGVARDLIRG 438
>09_04_0682 - 19429007-19429426
Length = 139
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = -3
Query: 533 DVGTHRGDAIQTRRRGHAATCRGGGSGV 450
D RG+A RRG AATCRGG + V
Sbjct: 70 DQSWRRGEA--AARRGEAATCRGGSAAV 95
>11_06_0059 +
19691588-19691697,19692281-19692348,19692400-19692579,
19693267-19693573,19694079-19694559
Length = 381
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -1
Query: 196 TRRPLVATPSTNKNTATSTRPSDSGN-VNNSSTMIENNLTDN 74
T P + PS AT SGN VN+ T +EN +TDN
Sbjct: 323 TENPNLHCPSGILQMATKFNSISSGNTVNSGGTAVENLITDN 364
>03_02_0338 +
7614199-7614450,7614518-7614703,7614815-7614927,
7615023-7615206,7615343-7615440,7616113-7616578,
7617342-7617683
Length = 546
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Frame = -1
Query: 571 PSPRPGEGASPLMTWGHIEGTPFR-LDGGDTPLPA 470
P P P GA+P TW TPF G P PA
Sbjct: 494 PPPLPPAGAAPNATWPPFPATPFNATTAGLAPAPA 528
>03_02_0254 +
6862762-6863663,6863994-6864241,6864323-6864465,
6864532-6864570,6865403-6865501
Length = 476
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -3
Query: 686 RDNKRHREESGRDSKRQDRRGRQ 618
R KR R+E+G + K +DRR RQ
Sbjct: 123 RKRKRERDEAGSEVKGEDRRRRQ 145
>08_02_0593 + 19078264-19078609,19078724-19082256
Length = 1292
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 436 LPASCTPLPPPRQVAACPRR 495
LPA C P PPPR+ AA R
Sbjct: 39 LPARCPPPPPPRRPAAAGGR 58
>05_03_0434 - 13980477-13980937,13981449-13981518
Length = 176
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -1
Query: 232 ILSHAATPKRT-PTRRPLVATPSTNKNTATST 140
I S P++T PT +P+V TPS+ K A T
Sbjct: 47 IRSRVIAPQKTLPTEKPVVPTPSSFKTMADKT 78
>12_01_0671 -
5702051-5702159,5702493-5703216,5703910-5704476,
5704654-5704873,5705303-5707207
Length = 1174
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -3
Query: 353 ALAEFSNEHRAPGQHVAGGQEISRETFTNTETQADAKRHGNFIARGNTET 204
ALA S+ R G GG+ +S + F TQ + GN E+
Sbjct: 814 ALASHSSRSRLNGNFAYGGECMSADRFLQDSTQRSNYSEQKVLVNGNLES 863
>11_06_0490 -
24293218-24293373,24293454-24293521,24293845-24293986,
24294079-24294699,24294791-24294871,24295002-24295072,
24296106-24296176,24296568-24296675,24296786-24297024,
24297493-24297657
Length = 573
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -3
Query: 698 R*EQRD-NKRHREESGRDSKRQDRRGRQQFEFREGRALS 585
R RD ++RHR S SK +DRR R + R + +S
Sbjct: 137 RDRDRDGHRRHRSRSRSPSKGRDRRSRSRSRSRSSKRVS 175
>11_06_0130 - 20408835-20411771
Length = 978
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = -1
Query: 163 NKNTATSTRPSDSGNVNNSSTMIENNLTDNLL 68
NKNT + T PS GN+N +++E L+DN L
Sbjct: 261 NKNTLSGTIPSCLGNLN---SLLELALSDNTL 289
>05_04_0035 + 17378541-17381276
Length = 911
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -1
Query: 316 ASMSPAARKLAAKHLLTPRLKLTPNDMGILSHAATPKRTPTRR 188
++ SPAA A HLL P L P+ G +A RR
Sbjct: 28 STASPAAAASATHHLLPPHAPLAPHARGFAFSSAEEAAAERRR 70
>01_06_0425 + 29264714-29266135
Length = 473
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +3
Query: 534 MRGDAPSPGRGDGVCSIG*RSSFSELKLLPSTPILPFTVAS*FLAM 671
+RGDAP P R DG ++ ++ E+ L +TP+ ++ F AM
Sbjct: 376 LRGDAPVPARADGP-AVEVKAMQDEVVLRVTTPLDEHPISRVFHAM 420
>01_05_0368 + 21434398-21434415,21434521-21434553,21437074-21437391
Length = 122
Score = 27.9 bits (59), Expect = 8.2
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = -1
Query: 232 ILSHAATPKRTPTRRPLV---ATPSTNKNTATSTRPSDSGNVNNSSTMIENN 86
+ ++++ P TP+ P ATP TN AT T + SG+ SS I N
Sbjct: 58 VQANSSQPASTPSTAPSTPNPATPQTNA-LATGTSGTPSGSAAQSSGTINTN 108
>01_01_0012 + 71903-72935,73468-73981,74619-76008
Length = 978
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = -3
Query: 698 R*EQRDNKRHREESGRDSK--RQDRRGRQQFEFREGRALSDTAD 573
R + R KRHREES SK R R G + +G LS T D
Sbjct: 616 RSDSRSPKRHREESLSPSKSRRSARAGSRSPGQHKGSKLSPTRD 659
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,410,701
Number of Sequences: 37544
Number of extensions: 340958
Number of successful extensions: 1928
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1927
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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