Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_I13
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    26   0.40 
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          23   2.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   6.4  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   8.5  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 25.8 bits (54), Expect = 0.40
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 677 KRHREESGRDSKRQDRRGRQQFEFRE-GRALSDTA 576
           K H  + GRD K   ++ R++F F++  RA+  T+
Sbjct: 423 KTHVWKKGRDKKSTSKKPRRKFHFKQIARAVKFTS 457


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 191 PCWCSFRCCRVR*NSHVVWRQ 253
           PC+C+   C++  N   V RQ
Sbjct: 1   PCYCTCEKCKITANRQQVMRQ 21


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 175 TPSTNKNTATSTRPSDSGNVNNSSTMIENNLTDN 74
           TP   + TAT+T+P  S       +  E N+ D+
Sbjct: 790 TPKKERKTATTTQPVISSRKEQKKSE-EKNINDH 822


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -1

Query: 184 LVATPSTNKNTATSTRPSDSGNVNNSSTMIENNLTDN 74
           ++ T   N N +T T  + + N +N++    NN  +N
Sbjct: 215 VLETCQRNSNNSTITAGNANTNASNNNNNNNNNNNNN 251


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = -3

Query: 530 VGTHRGDAIQTRRRGHAATCRGGG 459
           V  HR  +  T   GH   C  GG
Sbjct: 280 VKQHRSSSASTTCSGHTVRCFTGG 303


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,548
Number of Sequences: 438
Number of extensions: 3089
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)