Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_I10
(877 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 58 2e-09
SPCC285.12 |lsm7||U6 snRNP-associated protein Lsm7|Schizosacchar... 34 0.023
SPBC9B6.05c |lsm3||U6 snRNP-associated protein Lsm3|Schizosaccha... 33 0.053
SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8 |Schizosacch... 31 0.16
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 29 1.1
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 28 1.5
SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomy... 27 4.6
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc... 26 6.1
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 26 8.1
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch... 26 8.1
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 57.6 bits (133), Expect = 2e-09
Identities = 30/59 (50%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Frame = -2
Query: 876 RTFXGTFKAFDKHMNLILGDCEEFXKIKSXN-SXTADREXXRTLGFVLLRGENIVSLTI 703
RTF G AFD MNL+L DC+E+ IK N + E R LG V+LRGE IVSL++
Sbjct: 22 RTFVGQLLAFDGFMNLVLSDCQEYRHIKKQNVPSNSVYEEKRMLGLVILRGEFIVSLSV 80
>SPCC285.12 |lsm7||U6 snRNP-associated protein
Lsm7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 113
Score = 34.3 bits (75), Expect = 0.023
Identities = 20/54 (37%), Positives = 26/54 (48%)
Frame = -2
Query: 876 RTFXGTFKAFDKHMNLILGDCEEFXKIKSXNSXTADREXXRTLGFVLLRGENIV 715
R G K FD+ MNL+L D EE + T R LG V++RG +V
Sbjct: 44 RQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTG---AIRKLGLVVVRGTTLV 94
>SPBC9B6.05c |lsm3||U6 snRNP-associated protein
Lsm3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 93
Score = 33.1 bits (72), Expect = 0.053
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = -2
Query: 876 RTFXGTFKAFDKHMNLILGDCEEFXKI---KSXNSXTADREXXRTLGFVLLRGENIV 715
R G A+D+H+N++LGD EE I + + A + + + +RG++++
Sbjct: 30 RELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVRGDSVI 86
>SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 94
Score = 31.5 bits (68), Expect = 0.16
Identities = 23/53 (43%), Positives = 27/53 (50%)
Frame = -2
Query: 876 RTFXGTFKAFDKHMNLILGDCEEFXKIKSXNSXTADREXXRTLGFVLLRGENI 718
R G+ K FD NLIL D F +I S + D E LG LLRGEN+
Sbjct: 19 RVVLGSLKGFDHTTNLILSD--SFERIISMDQ---DMETI-PLGVYLLRGENV 65
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 28.7 bits (61), Expect = 1.1
Identities = 21/82 (25%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Frame = +3
Query: 354 INHKSLHCT*TNSVAFLEDPVLAHHDPCQEELPSFLEEGHPSWGLLAFEEEQKVDHDF-L 530
I+ ++ T T++V + + A+ + C + L ++E GL+A E+ + V+ F L
Sbjct: 86 ISPRNRSLTSTSAVEAVPASISAYDEFCSKYLSKYMELSKKIGGLIA-EQSEHVEKAFNL 144
Query: 531 VPCVVEMARLLLWQDLEDPEVL 596
+ V+ +A D++ PE+L
Sbjct: 145 LRQVLSVALKAQKPDMDSPELL 166
>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1220
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +1
Query: 28 SLPGVKQLLEPDTNNVNATTYFETQVRSLNPYTSSCSISNHQQI 159
++PG +++EP+ V T Y TQ + T+S ++S ++
Sbjct: 169 TVPGTVEVVEPEAGTVTTTVYSGTQEYTTTLATASGTVSGTVEV 212
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +1
Query: 28 SLPGVKQLLEPDTNNVNATTYFETQVRSLNPYTSSCSISNHQQI 159
++PG +++EP+ V T Y TQ + T+S ++S ++
Sbjct: 241 TVPGTVEVVEPEAGTVTTTVYSGTQEYTTTLATASGTVSGTVEV 284
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +1
Query: 28 SLPGVKQLLEPDTNNVNATTYFETQVRSLNPYTSSCSISNHQQI 159
++PG +++EP+ V T Y TQ + T+S ++S ++
Sbjct: 313 TVPGTVEVVEPEAGTVTTTVYSGTQEYTTTLATASGTVSGTVEV 356
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +1
Query: 28 SLPGVKQLLEPDTNNVNATTYFETQVRSLNPYTSSCSISNHQQI 159
++PG +++EP+ V T Y TQ + T+S ++S ++
Sbjct: 385 TVPGTVEVVEPEAGTVTTTVYSGTQEYTTTLATASGTVSGTVEV 428
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +1
Query: 28 SLPGVKQLLEPDTNNVNATTYFETQVRSLNPYTSSCSISNHQQI 159
++PG +++EP+ V T Y TQ + T+S ++S ++
Sbjct: 457 TVPGTVEVVEPEAGTVTTTVYSGTQEYTTTLATASGTVSGTVEV 500
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +1
Query: 28 SLPGVKQLLEPDTNNVNATTYFETQVRSLNPYTSSCSISNHQQI 159
++PG +++EP+ V T Y TQ + T+S ++S ++
Sbjct: 529 TVPGTVEVVEPEAGTVTTTVYSGTQEYTTTLATASGTVSGTVEV 572
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +1
Query: 28 SLPGVKQLLEPDTNNVNATTYFETQVRSLNPYTSSCSISNHQQI 159
++PG +++EP+ V T Y TQ + T+S ++S ++
Sbjct: 601 TVPGTVEVVEPEAGTVTTTVYSGTQEYTTTLATASGTVSGTVEV 644
>SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 84
Score = 26.6 bits (56), Expect = 4.6
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = -2
Query: 864 GTFKAFDKHMNLILGDCEEFXKIKSXNSXTADREXXRTLGFVLLRGENI 718
G + FD+ MN++L D ++ + N+ R LG +LL+G+NI
Sbjct: 40 GQIRGFDEFMNIVLDDA---VQVDAKNN-------KRELGRILLKGDNI 78
>SPAC12B10.03 |||WD repeat protein, human WDR20
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 26.2 bits (55), Expect = 6.1
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 465 EGHPSWGL-LAFEEEQKVDHDFLVPCVVEMARLLLWQDLEDPEVLRPGQCLYQQHEH 632
+GH SW + F+ + D ++ + V +LLLW D + RP +Y + H
Sbjct: 403 QGHKSWVTDVIFDAWRCDDDNYRIASVGLDRKLLLW-DFSVSAIHRPKSAVYYVNHH 458
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 25.8 bits (54), Expect = 8.1
Identities = 17/56 (30%), Positives = 32/56 (57%)
Frame = +3
Query: 432 PCQEELPSFLEEGHPSWGLLAFEEEQKVDHDFLVPCVVEMARLLLWQDLEDPEVLR 599
P ++ELP+ L P G LAF +++ V + + V + A+L + +L + ++LR
Sbjct: 329 PLEKELPAALPTEIPGVGDLAFFKQEDVKYFGKLLKVEDEAKLTI-AELRERKILR 383
>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 979
Score = 25.8 bits (54), Expect = 8.1
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +1
Query: 25 VSLPGVKQLLEPDTNNVNATTYFETQVRSLNPYTSSCSISNHQQISLM*KLS 180
+S V LE D+ N+N FE + + P TSS +N + L LS
Sbjct: 208 ISFNYVYYTLENDSENINEVKKFEDEEDTSTPNTSSFQ-NNSSSLDLSDNLS 258
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,868,765
Number of Sequences: 5004
Number of extensions: 51762
Number of successful extensions: 180
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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