Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_I10
         (877 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0479 + 3606663-3607448                                           73   2e-13
01_06_1461 - 37520885-37520965,37521366-37521461,37522160-37522297     41   0.001
08_01_0328 + 2959014-2959055,2959336-2959398,2960871-2960949,296...    32   0.69 
02_01_0209 - 1399613-1399622,1399719-1399764,1399849-1399927,140...    32   0.69 
03_02_0763 - 10977793-10978092,10978896-10978996,10979580-109796...    29   3.7  

>07_01_0479 + 3606663-3607448
          Length = 261

 Score = 73.3 bits (172), Expect = 2e-13
 Identities = 34/60 (56%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
 Frame = -2

Query: 876 RTFXGTFKAFDKHMNLILGDCEEFXKIKSXNS--XTADREXXRTLGFVLLRGENIVSLTI 703
           R   G F AFD+HMNL+LGDCEEF K+    S   T +RE  RTLG +LLRGE +VS+T+
Sbjct: 25  RQLVGKFMAFDRHMNLVLGDCEEFRKLPPSKSSKTTGEREERRTLGLLLLRGEEVVSMTV 84


>01_06_1461 - 37520885-37520965,37521366-37521461,37522160-37522297
          Length = 104

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
 Frame = -2

Query: 876 RTFXGTFKAFDKHMNLILGDCEEFXKIKSXNSXTAD---REXXRTLGFVLLRGENIV 715
           R   G   A+D+H+N+ILGD EE       +  T +   R   RT+ F+ +RG+ ++
Sbjct: 39  RELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTKRTIPFLFVRGDGVI 95


>08_01_0328 +
           2959014-2959055,2959336-2959398,2960871-2960949,
           2961038-2961083,2961566-2961671
          Length = 111

 Score = 31.9 bits (69), Expect = 0.69
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -2

Query: 864 GTFKAFDKHMNLILGDCEEFXKIKSXNSXTADREXXRTLGFVLLRGENI 718
           G    FD++MNL+L D EE             ++  ++LG +LL+G+NI
Sbjct: 32  GRIIGFDEYMNLVLDDAEEI---------NVKKDTRKSLGRILLKGDNI 71


>02_01_0209 -
           1399613-1399622,1399719-1399764,1399849-1399927,
           1400004-1400162,1400988-1401050,1401154-1401222
          Length = 141

 Score = 31.9 bits (69), Expect = 0.69
 Identities = 18/46 (39%), Positives = 29/46 (63%)
 Frame = -2

Query: 855 KAFDKHMNLILGDCEEFXKIKSXNSXTADREXXRTLGFVLLRGENI 718
           K FD++MNL+L + EE   IK        ++  ++LG +LL+G+NI
Sbjct: 97  KGFDEYMNLVLDEAEEI-NIK--------KDTRKSLGRILLKGDNI 133


>03_02_0763 -
           10977793-10978092,10978896-10978996,10979580-10979648,
           10979787-10979857,10979946-10980100,10980348-10980477,
           10980946-10981013,10981335-10981592
          Length = 383

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -1

Query: 523 SWSTFCSSSNARRPHDGWPSSRNDGSSSWHGSWW 422
           SW+  C   +   P +   +++ND    WHG+WW
Sbjct: 213 SWNPHCRYLDGIGPKENNSNAQND----WHGAWW 242


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,173,109
Number of Sequences: 37544
Number of extensions: 314563
Number of successful extensions: 906
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)