Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_I10
(877 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X17568-1|CAB57868.1| 240|Homo sapiens snRNP B' protein protein. 94 7e-19
X17567-1|CAB57867.1| 231|Homo sapiens snRNP B protein protein. 94 7e-19
X15893-1|CAA33902.1| 231|Homo sapiens protein ( Human B cod gen... 94 7e-19
M34082-1|AAA36579.1| 233|Homo sapiens protein ( Human small nuc... 94 7e-19
M34081-1|AAA36578.1| 224|Homo sapiens protein ( Human small nuc... 94 7e-19
J04564-1|AAA60151.1| 285|Homo sapiens SNRPB protein. 94 7e-19
CR456969-1|CAG33250.1| 240|Homo sapiens SNRPB protein. 94 7e-19
BC080516-1|AAH80516.1| 231|Homo sapiens small nuclear ribonucle... 94 7e-19
BC003530-1|AAH03530.1| 234|Homo sapiens SNRPB protein protein. 94 7e-19
AY742712-1|AAU89981.1| 231|Homo sapiens small nuclear ribonucle... 94 7e-19
AL049650-8|CAB46715.1| 240|Homo sapiens small nuclear ribonucle... 94 7e-19
AL049650-7|CAB46714.1| 231|Homo sapiens small nuclear ribonucle... 94 7e-19
X16163-1|CAA34288.1| 218|Homo sapiens SmB /B' autoimmune antige... 91 6e-18
X15892-1|CAA33901.1| 240|Homo sapiens protein ( Human hcerN3 ge... 91 6e-18
U41303-1|AAA98969.1| 240|Homo sapiens small nuclear ribonuleopr... 91 6e-18
J04615-1|AAA36617.1| 240|Homo sapiens protein ( Human lupus aut... 91 6e-18
CR450350-1|CAG29346.1| 240|Homo sapiens SNRPN protein. 91 6e-18
BC025178-1|AAH25178.1| 240|Homo sapiens small nuclear ribonucle... 91 6e-18
BC024777-1|AAH24777.1| 240|Homo sapiens SNURF protein protein. 91 6e-18
BC003180-1|AAH03180.1| 240|Homo sapiens small nuclear ribonucle... 91 6e-18
BC000611-1|AAH00611.1| 240|Homo sapiens SNRPN protein protein. 91 6e-18
AF400432-1|AAK92481.1| 240|Homo sapiens small nuclear ribonucle... 91 6e-18
AK222633-1|BAD96353.1| 240|Homo sapiens small nuclear ribonucle... 89 2e-17
AF134825-2|AAD54488.1| 234|Homo sapiens small nuclear ribonucle... 89 3e-17
AF134825-1|AAD54489.1| 243|Homo sapiens small nuclear ribonucle... 89 3e-17
BC065369-1|AAH65369.1| 208|Homo sapiens Unknown (protein for MG... 55 4e-07
AL513477-10|CAI22612.3| 208|Homo sapiens small nuclear ribonucl... 55 4e-07
BC059944-1|AAH59944.1| 125|Homo sapiens LSMD1 protein protein. 37 0.083
BC051846-1|AAH51846.1| 125|Homo sapiens LSMD1 protein protein. 37 0.083
BC033861-1|AAH33861.1| 173|Homo sapiens LSM domain containing 1... 37 0.083
BC006407-1|AAH06407.1| 125|Homo sapiens LSMD1 protein protein. 37 0.083
AF530060-1|AAQ09944.1| 125|Homo sapiens phosphonoformate immuno... 37 0.083
CR457185-1|CAG33466.1| 102|Homo sapiens LSM3 protein. 35 0.34
BC007055-1|AAH07055.1| 102|Homo sapiens LSM3 homolog, U6 small ... 35 0.34
AJ238095-1|CAB45866.1| 102|Homo sapiens Lsm3 protein protein. 35 0.34
AF182418-1|AAG14954.1| 102|Homo sapiens MDS017 protein. 35 0.34
AF182289-1|AAD56227.1| 102|Homo sapiens U6 snRNA-associated Sm-... 35 0.34
DQ333316-1|ABD24032.1| 2881|Homo sapiens PRIC320 isoform 1 protein. 34 0.59
AY647157-1|AAT66509.1| 2881|Homo sapiens KISH2 protein. 34 0.59
AY243500-1|AAQ24287.1| 2897|Homo sapiens chromatin remodeling fa... 34 0.59
AK092208-1|BAC03829.1| 638|Homo sapiens protein ( Homo sapiens ... 34 0.59
AB002306-1|BAA20767.3| 2759|Homo sapiens KIAA0308 protein. 34 0.59
X58233-1|CAA41191.1| 50|Homo sapiens 36/8-3 fusion protein wit... 33 1.0
X12466-1|CAA31007.1| 92|Homo sapiens protein ( Human mRNA for ... 32 2.4
M37716-1|AAA90926.1| 92|Homo sapiens small nuclear RNA protein... 32 2.4
M21258-1|AAB59365.1| 92|Homo sapiens protein ( Human small nuc... 32 2.4
M15919-1|AAA36621.1| 81|Homo sapiens protein ( Human autoimmun... 32 2.4
BC090951-1|AAH90951.1| 92|Homo sapiens small nuclear ribonucle... 32 2.4
BC002639-1|AAH02639.1| 92|Homo sapiens small nuclear ribonucle... 32 2.4
AL354707-4|CAH73282.1| 92|Homo sapiens small nuclear ribonucle... 32 2.4
AK128140-1|BAC87294.1| 280|Homo sapiens protein ( Homo sapiens ... 31 7.2
AK125824-1|BAC86307.1| 280|Homo sapiens protein ( Homo sapiens ... 31 7.2
>X17568-1|CAB57868.1| 240|Homo sapiens snRNP B' protein protein.
Length = 240
Score = 93.9 bits (223), Expect = 7e-19
Identities = 55/128 (42%), Positives = 62/128 (48%), Gaps = 4/128 (3%)
Frame = -2
Query: 876 RTFXGTFKAFDKHMNLILGDCEEFXKIKSXNSXTADREXXRTLGFVLLRGENIVSLTIX- 700
R F GTFKAFDKHMNLIL DC+EF KIK NS A+RE R LG VLLRGEN+VS+T+
Sbjct: 25 RIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEG 84
Query: 699 ---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGVGGPSQQHMAP 529
RGVGGPSQQ M P
Sbjct: 85 PPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTP 144
Query: 528 GNRGQLSA 505
RG ++A
Sbjct: 145 QGRGTVAA 152
>X17567-1|CAB57867.1| 231|Homo sapiens snRNP B protein protein.
Length = 231
Score = 93.9 bits (223), Expect = 7e-19
Identities = 55/128 (42%), Positives = 62/128 (48%), Gaps = 4/128 (3%)
Frame = -2
Query: 876 RTFXGTFKAFDKHMNLILGDCEEFXKIKSXNSXTADREXXRTLGFVLLRGENIVSLTIX- 700
R F GTFKAFDKHMNLIL DC+EF KIK NS A+RE R LG VLLRGEN+VS+T+
Sbjct: 25 RIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEG 84
Query: 699 ---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGVGGPSQQHMAP 529
RGVGGPSQQ M P
Sbjct: 85 PPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTP 144
Query: 528 GNRGQLSA 505
RG ++A
Sbjct: 145 QGRGTVAA 152
>X15893-1|CAA33902.1| 231|Homo sapiens protein ( Human B cod gene
for B/B' snRNP associated protein. ).
Length = 231
Score = 93.9 bits (223), Expect = 7e-19
Identities = 55/128 (42%), Positives = 62/128 (48%), Gaps = 4/128 (3%)
Frame = -2
Query: 876 RTFXGTFKAFDKHMNLILGDCEEFXKIKSXNSXTADREXXRTLGFVLLRGENIVSLTIX- 700
R F GTFKAFDKHMNLIL DC+EF KIK NS A+RE R LG VLLRGEN+VS+T+
Sbjct: 25 RIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEG 84
Query: 699 ---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGVGGPSQQHMAP 529
RGVGGPSQQ M P
Sbjct: 85 PPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTP 144
Query: 528 GNRGQLSA 505
RG ++A
Sbjct: 145 QGRGTVAA 152
>M34082-1|AAA36579.1| 233|Homo sapiens protein ( Human small
nuclear ribonucleoprotein particle SmB' mRNA, 3' end. ).
Length = 233
Score = 93.9 bits (223), Expect = 7e-19
Identities = 55/128 (42%), Positives = 62/128 (48%), Gaps = 4/128 (3%)
Frame = -2
Query: 876 RTFXGTFKAFDKHMNLILGDCEEFXKIKSXNSXTADREXXRTLGFVLLRGENIVSLTIX- 700
R F GTFKAFDKHMNLIL DC+EF KIK NS A+RE R LG VLLRGEN+VS+T+
Sbjct: 18 RIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEG 77
Query: 699 ---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGVGGPSQQHMAP 529
RGVGGPSQQ M P
Sbjct: 78 PPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTP 137
Query: 528 GNRGQLSA 505
RG ++A
Sbjct: 138 QGRGTVAA 145
>M34081-1|AAA36578.1| 224|Homo sapiens protein ( Human small
nuclear ribonucleoprotein particle SmB mRNA, 3' end. ).
Length = 224
Score = 93.9 bits (223), Expect = 7e-19
Identities = 55/128 (42%), Positives = 62/128 (48%), Gaps = 4/128 (3%)
Frame = -2
Query: 876 RTFXGTFKAFDKHMNLILGDCEEFXKIKSXNSXTADREXXRTLGFVLLRGENIVSLTIX- 700
R F GTFKAFDKHMNLIL DC+EF KIK NS A+RE R LG VLLRGEN+VS+T+
Sbjct: 18 RIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEG 77
Query: 699 ---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGVGGPSQQHMAP 529
RGVGGPSQQ M P
Sbjct: 78 PPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTP 137
Query: 528 GNRGQLSA 505
RG ++A
Sbjct: 138 QGRGTVAA 145
>J04564-1|AAA60151.1| 285|Homo sapiens SNRPB protein.
Length = 285
Score = 93.9 bits (223), Expect = 7e-19
Identities = 55/128 (42%), Positives = 62/128 (48%), Gaps = 4/128 (3%)
Frame = -2
Query: 876 RTFXGTFKAFDKHMNLILGDCEEFXKIKSXNSXTADREXXRTLGFVLLRGENIVSLTIX- 700
R F GTFKAFDKHMNLIL DC+EF KIK NS A+RE R LG VLLRGEN+VS+T+
Sbjct: 25 RIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEG 84
Query: 699 ---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGVGGPSQQHMAP 529
RGVGGPSQQ M P
Sbjct: 85 PPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTP 144
Query: 528 GNRGQLSA 505
RG ++A
Sbjct: 145 QGRGTVAA 152
>CR456969-1|CAG33250.1| 240|Homo sapiens SNRPB protein.
Length = 240
Score = 93.9 bits (223), Expect = 7e-19
Identities = 55/128 (42%), Positives = 62/128 (48%), Gaps = 4/128 (3%)
Frame = -2
Query: 876 RTFXGTFKAFDKHMNLILGDCEEFXKIKSXNSXTADREXXRTLGFVLLRGENIVSLTIX- 700
R F GTFKAFDKHMNLIL DC+EF KIK NS A+RE R LG VLLRGEN+VS+T+
Sbjct: 25 RIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEG 84
Query: 699 ---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGVGGPSQQHMAP 529
RGVGGPSQQ M P
Sbjct: 85 PPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTP 144
Query: 528 GNRGQLSA 505
RG ++A
Sbjct: 145 QGRGTVAA 152
>BC080516-1|AAH80516.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 231
Score = 93.9 bits (223), Expect = 7e-19
Identities = 55/128 (42%), Positives = 62/128 (48%), Gaps = 4/128 (3%)
Frame = -2
Query: 876 RTFXGTFKAFDKHMNLILGDCEEFXKIKSXNSXTADREXXRTLGFVLLRGENIVSLTIX- 700
R F GTFKAFDKHMNLIL DC+EF KIK NS A+RE R LG VLLRGEN+VS+T+
Sbjct: 25 RIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEG 84
Query: 699 ---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGVGGPSQQHMAP 529
RGVGGPSQQ M P
Sbjct: 85 PPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTP 144
Query: 528 GNRGQLSA 505
RG ++A
Sbjct: 145 QGRGTVAA 152
>BC003530-1|AAH03530.1| 234|Homo sapiens SNRPB protein protein.
Length = 234
Score = 93.9 bits (223), Expect = 7e-19
Identities = 55/128 (42%), Positives = 62/128 (48%), Gaps = 4/128 (3%)
Frame = -2
Query: 876 RTFXGTFKAFDKHMNLILGDCEEFXKIKSXNSXTADREXXRTLGFVLLRGENIVSLTIX- 700
R F GTFKAFDKHMNLIL DC+EF KIK NS A+RE R LG VLLRGEN+VS+T+
Sbjct: 25 RIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEG 84
Query: 699 ---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGVGGPSQQHMAP 529
RGVGGPSQQ M P
Sbjct: 85 PPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTP 144
Query: 528 GNRGQLSA 505
RG ++A
Sbjct: 145 QGRGTVAA 152
>AY742712-1|AAU89981.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptide B protein.
Length = 231
Score = 93.9 bits (223), Expect = 7e-19
Identities = 55/128 (42%), Positives = 62/128 (48%), Gaps = 4/128 (3%)
Frame = -2
Query: 876 RTFXGTFKAFDKHMNLILGDCEEFXKIKSXNSXTADREXXRTLGFVLLRGENIVSLTIX- 700
R F GTFKAFDKHMNLIL DC+EF KIK NS A+RE R LG VLLRGEN+VS+T+
Sbjct: 25 RIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSEQAEREEKRVLGLVLLRGENLVSMTVEG 84
Query: 699 ---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGVGGPSQQHMAP 529
RGVGGPSQQ M P
Sbjct: 85 PPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTP 144
Query: 528 GNRGQLSA 505
RG ++A
Sbjct: 145 QGRGTVAA 152
>AL049650-8|CAB46715.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 240
Score = 93.9 bits (223), Expect = 7e-19
Identities = 55/128 (42%), Positives = 62/128 (48%), Gaps = 4/128 (3%)
Frame = -2
Query: 876 RTFXGTFKAFDKHMNLILGDCEEFXKIKSXNSXTADREXXRTLGFVLLRGENIVSLTIX- 700
R F GTFKAFDKHMNLIL DC+EF KIK NS A+RE R LG VLLRGEN+VS+T+
Sbjct: 25 RIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEG 84
Query: 699 ---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGVGGPSQQHMAP 529
RGVGGPSQQ M P
Sbjct: 85 PPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTP 144
Query: 528 GNRGQLSA 505
RG ++A
Sbjct: 145 QGRGTVAA 152
>AL049650-7|CAB46714.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 231
Score = 93.9 bits (223), Expect = 7e-19
Identities = 55/128 (42%), Positives = 62/128 (48%), Gaps = 4/128 (3%)
Frame = -2
Query: 876 RTFXGTFKAFDKHMNLILGDCEEFXKIKSXNSXTADREXXRTLGFVLLRGENIVSLTIX- 700
R F GTFKAFDKHMNLIL DC+EF KIK NS A+RE R LG VLLRGEN+VS+T+
Sbjct: 25 RIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEG 84
Query: 699 ---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGVGGPSQQHMAP 529
RGVGGPSQQ M P
Sbjct: 85 PPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTP 144
Query: 528 GNRGQLSA 505
RG ++A
Sbjct: 145 QGRGTVAA 152
>X16163-1|CAA34288.1| 218|Homo sapiens SmB /B' autoimmune antigene
protein.
Length = 218
Score = 90.6 bits (215), Expect = 6e-18
Identities = 53/128 (41%), Positives = 61/128 (47%), Gaps = 4/128 (3%)
Frame = -2
Query: 876 RTFXGTFKAFDKHMNLILGDCEEFXKIKSXNSXTADREXXRTLGFVLLRGENIVSLTIX- 700
R F GTFKAFDKHMNLIL DC+EF KIK N+ +RE R LG VLLRGEN+VS+T+
Sbjct: 3 RIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEG 62
Query: 699 ---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGVGGPSQQHMAP 529
RGVGGPSQQ M P
Sbjct: 63 PPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTP 122
Query: 528 GNRGQLSA 505
RG ++A
Sbjct: 123 QGRGTVAA 130
>X15892-1|CAA33901.1| 240|Homo sapiens protein ( Human hcerN3 gene
mRNA for N snRNP associated protein. ).
Length = 240
Score = 90.6 bits (215), Expect = 6e-18
Identities = 53/128 (41%), Positives = 61/128 (47%), Gaps = 4/128 (3%)
Frame = -2
Query: 876 RTFXGTFKAFDKHMNLILGDCEEFXKIKSXNSXTADREXXRTLGFVLLRGENIVSLTIX- 700
R F GTFKAFDKHMNLIL DC+EF KIK N+ +RE R LG VLLRGEN+VS+T+
Sbjct: 25 RIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEG 84
Query: 699 ---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGVGGPSQQHMAP 529
RGVGGPSQQ M P
Sbjct: 85 PPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTP 144
Query: 528 GNRGQLSA 505
RG ++A
Sbjct: 145 QGRGTVAA 152
>U41303-1|AAA98969.1| 240|Homo sapiens small nuclear
ribonuleoprotein particle N protein.
Length = 240
Score = 90.6 bits (215), Expect = 6e-18
Identities = 53/128 (41%), Positives = 61/128 (47%), Gaps = 4/128 (3%)
Frame = -2
Query: 876 RTFXGTFKAFDKHMNLILGDCEEFXKIKSXNSXTADREXXRTLGFVLLRGENIVSLTIX- 700
R F GTFKAFDKHMNLIL DC+EF KIK N+ +RE R LG VLLRGEN+VS+T+
Sbjct: 25 RIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEG 84
Query: 699 ---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGVGGPSQQHMAP 529
RGVGGPSQQ M P
Sbjct: 85 PPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTP 144
Query: 528 GNRGQLSA 505
RG ++A
Sbjct: 145 QGRGTVAA 152
>J04615-1|AAA36617.1| 240|Homo sapiens protein ( Human lupus
autoantigen (small nuclear ribonuclepoprotein, snRNP,
SM-D) mRNA, complete cds. ).
Length = 240
Score = 90.6 bits (215), Expect = 6e-18
Identities = 53/128 (41%), Positives = 61/128 (47%), Gaps = 4/128 (3%)
Frame = -2
Query: 876 RTFXGTFKAFDKHMNLILGDCEEFXKIKSXNSXTADREXXRTLGFVLLRGENIVSLTIX- 700
R F GTFKAFDKHMNLIL DC+EF KIK N+ +RE R LG VLLRGEN+VS+T+
Sbjct: 25 RIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEG 84
Query: 699 ---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGVGGPSQQHMAP 529
RGVGGPSQQ M P
Sbjct: 85 PPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTP 144
Query: 528 GNRGQLSA 505
RG ++A
Sbjct: 145 QGRGTVAA 152
>CR450350-1|CAG29346.1| 240|Homo sapiens SNRPN protein.
Length = 240
Score = 90.6 bits (215), Expect = 6e-18
Identities = 53/128 (41%), Positives = 61/128 (47%), Gaps = 4/128 (3%)
Frame = -2
Query: 876 RTFXGTFKAFDKHMNLILGDCEEFXKIKSXNSXTADREXXRTLGFVLLRGENIVSLTIX- 700
R F GTFKAFDKHMNLIL DC+EF KIK N+ +RE R LG VLLRGEN+VS+T+
Sbjct: 25 RIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEG 84
Query: 699 ---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGVGGPSQQHMAP 529
RGVGGPSQQ M P
Sbjct: 85 PPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTP 144
Query: 528 GNRGQLSA 505
RG ++A
Sbjct: 145 QGRGTVAA 152
>BC025178-1|AAH25178.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 90.6 bits (215), Expect = 6e-18
Identities = 53/128 (41%), Positives = 61/128 (47%), Gaps = 4/128 (3%)
Frame = -2
Query: 876 RTFXGTFKAFDKHMNLILGDCEEFXKIKSXNSXTADREXXRTLGFVLLRGENIVSLTIX- 700
R F GTFKAFDKHMNLIL DC+EF KIK N+ +RE R LG VLLRGEN+VS+T+
Sbjct: 25 RIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEG 84
Query: 699 ---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGVGGPSQQHMAP 529
RGVGGPSQQ M P
Sbjct: 85 PPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTP 144
Query: 528 GNRGQLSA 505
RG ++A
Sbjct: 145 QGRGTVAA 152
>BC024777-1|AAH24777.1| 240|Homo sapiens SNURF protein protein.
Length = 240
Score = 90.6 bits (215), Expect = 6e-18
Identities = 53/128 (41%), Positives = 61/128 (47%), Gaps = 4/128 (3%)
Frame = -2
Query: 876 RTFXGTFKAFDKHMNLILGDCEEFXKIKSXNSXTADREXXRTLGFVLLRGENIVSLTIX- 700
R F GTFKAFDKHMNLIL DC+EF KIK N+ +RE R LG VLLRGEN+VS+T+
Sbjct: 25 RIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEG 84
Query: 699 ---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGVGGPSQQHMAP 529
RGVGGPSQQ M P
Sbjct: 85 PPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTP 144
Query: 528 GNRGQLSA 505
RG ++A
Sbjct: 145 QGRGTVAA 152
>BC003180-1|AAH03180.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 90.6 bits (215), Expect = 6e-18
Identities = 53/128 (41%), Positives = 61/128 (47%), Gaps = 4/128 (3%)
Frame = -2
Query: 876 RTFXGTFKAFDKHMNLILGDCEEFXKIKSXNSXTADREXXRTLGFVLLRGENIVSLTIX- 700
R F GTFKAFDKHMNLIL DC+EF KIK N+ +RE R LG VLLRGEN+VS+T+
Sbjct: 25 RIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEG 84
Query: 699 ---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGVGGPSQQHMAP 529
RGVGGPSQQ M P
Sbjct: 85 PPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTP 144
Query: 528 GNRGQLSA 505
RG ++A
Sbjct: 145 QGRGTVAA 152
>BC000611-1|AAH00611.1| 240|Homo sapiens SNRPN protein protein.
Length = 240
Score = 90.6 bits (215), Expect = 6e-18
Identities = 53/128 (41%), Positives = 61/128 (47%), Gaps = 4/128 (3%)
Frame = -2
Query: 876 RTFXGTFKAFDKHMNLILGDCEEFXKIKSXNSXTADREXXRTLGFVLLRGENIVSLTIX- 700
R F GTFKAFDKHMNLIL DC+EF KIK N+ +RE R LG VLLRGEN+VS+T+
Sbjct: 25 RIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEG 84
Query: 699 ---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGVGGPSQQHMAP 529
RGVGGPSQQ M P
Sbjct: 85 PPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTP 144
Query: 528 GNRGQLSA 505
RG ++A
Sbjct: 145 QGRGTVAA 152
>AF400432-1|AAK92481.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 90.6 bits (215), Expect = 6e-18
Identities = 53/128 (41%), Positives = 61/128 (47%), Gaps = 4/128 (3%)
Frame = -2
Query: 876 RTFXGTFKAFDKHMNLILGDCEEFXKIKSXNSXTADREXXRTLGFVLLRGENIVSLTIX- 700
R F GTFKAFDKHMNLIL DC+EF KIK N+ +RE R LG VLLRGEN+VS+T+
Sbjct: 25 RIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEG 84
Query: 699 ---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGVGGPSQQHMAP 529
RGVGGPSQQ M P
Sbjct: 85 PPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTP 144
Query: 528 GNRGQLSA 505
RG ++A
Sbjct: 145 QGRGTVAA 152
>AK222633-1|BAD96353.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N variant protein.
Length = 240
Score = 89.0 bits (211), Expect = 2e-17
Identities = 53/128 (41%), Positives = 60/128 (46%), Gaps = 4/128 (3%)
Frame = -2
Query: 876 RTFXGTFKAFDKHMNLILGDCEEFXKIKSXNSXTADREXXRTLGFVLLRGENIVSLTIX- 700
R F GTFKAFDKHMNLIL DC EF KIK N+ +RE R LG VLLRGEN+VS+T+
Sbjct: 25 RIFIGTFKAFDKHMNLILCDCGEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEG 84
Query: 699 ---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGVGGPSQQHMAP 529
RGVGGPSQQ M P
Sbjct: 85 PPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTP 144
Query: 528 GNRGQLSA 505
RG ++A
Sbjct: 145 QGRGTVAA 152
>AF134825-2|AAD54488.1| 234|Homo sapiens small nuclear
ribonucleoprotein B protein.
Length = 234
Score = 88.6 bits (210), Expect = 3e-17
Identities = 41/58 (70%), Positives = 46/58 (79%)
Frame = -2
Query: 876 RTFXGTFKAFDKHMNLILGDCEEFXKIKSXNSXTADREXXRTLGFVLLRGENIVSLTI 703
R F GTFKAFDKHMNLIL DC+EF KIK NS A+RE R LG VLLRGEN+VS+T+
Sbjct: 25 RIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTV 82
>AF134825-1|AAD54489.1| 243|Homo sapiens small nuclear
ribonucleoprotein B' protein.
Length = 243
Score = 88.6 bits (210), Expect = 3e-17
Identities = 41/58 (70%), Positives = 46/58 (79%)
Frame = -2
Query: 876 RTFXGTFKAFDKHMNLILGDCEEFXKIKSXNSXTADREXXRTLGFVLLRGENIVSLTI 703
R F GTFKAFDKHMNLIL DC+EF KIK NS A+RE R LG VLLRGEN+VS+T+
Sbjct: 25 RIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTV 82
>BC065369-1|AAH65369.1| 208|Homo sapiens Unknown (protein for
MGC:71285) protein.
Length = 208
Score = 54.8 bits (126), Expect = 4e-07
Identities = 25/44 (56%), Positives = 29/44 (65%)
Frame = -2
Query: 876 RTFXGTFKAFDKHMNLILGDCEEFXKIKSXNSXTADREXXRTLG 745
R F GTFKAFDKHMN+I DC+EF K+K N+ RE R G
Sbjct: 65 RVFIGTFKAFDKHMNMIPCDCDEFRKMKLKNAKQPAREEKRVSG 108
>AL513477-10|CAI22612.3| 208|Homo sapiens small nuclear
ribonucleoprotein N (SNRPN) pseudogene protein.
Length = 208
Score = 54.8 bits (126), Expect = 4e-07
Identities = 25/44 (56%), Positives = 29/44 (65%)
Frame = -2
Query: 876 RTFXGTFKAFDKHMNLILGDCEEFXKIKSXNSXTADREXXRTLG 745
R F GTFKAFDKHMN+I DC+EF K+K N+ RE R G
Sbjct: 65 RVFIGTFKAFDKHMNMIPCDCDEFRKMKLKNAKQPAREEKRVSG 108
>BC059944-1|AAH59944.1| 125|Homo sapiens LSMD1 protein protein.
Length = 125
Score = 37.1 bits (82), Expect = 0.083
Identities = 21/58 (36%), Positives = 32/58 (55%)
Frame = -2
Query: 876 RTFXGTFKAFDKHMNLILGDCEEFXKIKSXNSXTADREXXRTLGFVLLRGENIVSLTI 703
RT G F D+ N+ILG +EF +K +S +A R LG ++ G +IVS+ +
Sbjct: 61 RTLVGCFLCTDRDCNVILGSAQEF--LKPSDSFSAGEP--RVLGLAMVPGHHIVSIEV 114
>BC051846-1|AAH51846.1| 125|Homo sapiens LSMD1 protein protein.
Length = 125
Score = 37.1 bits (82), Expect = 0.083
Identities = 21/58 (36%), Positives = 32/58 (55%)
Frame = -2
Query: 876 RTFXGTFKAFDKHMNLILGDCEEFXKIKSXNSXTADREXXRTLGFVLLRGENIVSLTI 703
RT G F D+ N+ILG +EF +K +S +A R LG ++ G +IVS+ +
Sbjct: 61 RTLVGCFLCTDRDCNVILGSAQEF--LKPSDSFSAGEP--RVLGLAMVPGHHIVSIEV 114
>BC033861-1|AAH33861.1| 173|Homo sapiens LSM domain containing 1
protein.
Length = 173
Score = 37.1 bits (82), Expect = 0.083
Identities = 21/58 (36%), Positives = 32/58 (55%)
Frame = -2
Query: 876 RTFXGTFKAFDKHMNLILGDCEEFXKIKSXNSXTADREXXRTLGFVLLRGENIVSLTI 703
RT G F D+ N+ILG +EF +K +S +A R LG ++ G +IVS+ +
Sbjct: 109 RTLVGCFLCTDRDCNVILGSAQEF--LKPSDSFSAGEP--RVLGLAMVPGHHIVSIEV 162
>BC006407-1|AAH06407.1| 125|Homo sapiens LSMD1 protein protein.
Length = 125
Score = 37.1 bits (82), Expect = 0.083
Identities = 21/58 (36%), Positives = 32/58 (55%)
Frame = -2
Query: 876 RTFXGTFKAFDKHMNLILGDCEEFXKIKSXNSXTADREXXRTLGFVLLRGENIVSLTI 703
RT G F D+ N+ILG +EF +K +S +A R LG ++ G +IVS+ +
Sbjct: 61 RTLVGCFLCTDRDCNVILGSAQEF--LKPSDSFSAGEP--RVLGLAMVPGHHIVSIEV 114
>AF530060-1|AAQ09944.1| 125|Homo sapiens phosphonoformate
immuno-associated protein 2 protein.
Length = 125
Score = 37.1 bits (82), Expect = 0.083
Identities = 21/58 (36%), Positives = 32/58 (55%)
Frame = -2
Query: 876 RTFXGTFKAFDKHMNLILGDCEEFXKIKSXNSXTADREXXRTLGFVLLRGENIVSLTI 703
RT G F D+ N+ILG +EF +K +S +A R LG ++ G +IVS+ +
Sbjct: 61 RTLVGCFLCTDRDCNVILGSAQEF--LKPSDSFSAGEP--RVLGLAMVPGHHIVSIEV 114
>CR457185-1|CAG33466.1| 102|Homo sapiens LSM3 protein.
Length = 102
Score = 35.1 bits (77), Expect = 0.34
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = -2
Query: 876 RTFXGTFKAFDKHMNLILGDCEEFXKIKSXNSXTAD---REXXRTLGFVLLRGENIV 715
R G A+D+H+N+ILGD EE + T + + R + + +RG+ +V
Sbjct: 37 RELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVV 93
>BC007055-1|AAH07055.1| 102|Homo sapiens LSM3 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 102
Score = 35.1 bits (77), Expect = 0.34
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = -2
Query: 876 RTFXGTFKAFDKHMNLILGDCEEFXKIKSXNSXTAD---REXXRTLGFVLLRGENIV 715
R G A+D+H+N+ILGD EE + T + + R + + +RG+ +V
Sbjct: 37 RELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVV 93
>AJ238095-1|CAB45866.1| 102|Homo sapiens Lsm3 protein protein.
Length = 102
Score = 35.1 bits (77), Expect = 0.34
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = -2
Query: 876 RTFXGTFKAFDKHMNLILGDCEEFXKIKSXNSXTAD---REXXRTLGFVLLRGENIV 715
R G A+D+H+N+ILGD EE + T + + R + + +RG+ +V
Sbjct: 37 RELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVV 93
>AF182418-1|AAG14954.1| 102|Homo sapiens MDS017 protein.
Length = 102
Score = 35.1 bits (77), Expect = 0.34
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = -2
Query: 876 RTFXGTFKAFDKHMNLILGDCEEFXKIKSXNSXTAD---REXXRTLGFVLLRGENIV 715
R G A+D+H+N+ILGD EE + T + + R + + +RG+ +V
Sbjct: 37 RELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVV 93
>AF182289-1|AAD56227.1| 102|Homo sapiens U6 snRNA-associated
Sm-like protein LSm3 protein.
Length = 102
Score = 35.1 bits (77), Expect = 0.34
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = -2
Query: 876 RTFXGTFKAFDKHMNLILGDCEEFXKIKSXNSXTAD---REXXRTLGFVLLRGENIV 715
R G A+D+H+N+ILGD EE + T + + R + + +RG+ +V
Sbjct: 37 RELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVV 93
>DQ333316-1|ABD24032.1| 2881|Homo sapiens PRIC320 isoform 1 protein.
Length = 2881
Score = 34.3 bits (75), Expect = 0.59
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +1
Query: 4 ASPGQQGVSLPGVKQLLEPDTNNVNATTYFETQVRSLNPYTSSCSISNHQQISLM*KLSN 183
AS QQ +S+ Q P + +++ E +P +SCS+SN QQ S S+
Sbjct: 219 ASNSQQSISMQQFSQTSNPSAHFHKCSSHQEGNFNGPSPNMTSCSVSNSQQFSSHYSFSS 278
Query: 184 *H 189
H
Sbjct: 279 NH 280
>AY647157-1|AAT66509.1| 2881|Homo sapiens KISH2 protein.
Length = 2881
Score = 34.3 bits (75), Expect = 0.59
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +1
Query: 4 ASPGQQGVSLPGVKQLLEPDTNNVNATTYFETQVRSLNPYTSSCSISNHQQISLM*KLSN 183
AS QQ +S+ Q P + +++ E +P +SCS+SN QQ S S+
Sbjct: 219 ASNSQQSISMQQFSQTSNPSAHFHKCSSHQEGNFNGPSPNMTSCSVSNSQQFSSHYSFSS 278
Query: 184 *H 189
H
Sbjct: 279 NH 280
>AY243500-1|AAQ24287.1| 2897|Homo sapiens chromatin remodeling
factor CHROM1 protein.
Length = 2897
Score = 34.3 bits (75), Expect = 0.59
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +1
Query: 4 ASPGQQGVSLPGVKQLLEPDTNNVNATTYFETQVRSLNPYTSSCSISNHQQISLM*KLSN 183
AS QQ +S+ Q P + +++ E +P +SCS+SN QQ S S+
Sbjct: 219 ASNSQQSISMQQFSQTSNPSAHFHKCSSHQEGNFNGPSPNMTSCSVSNSQQFSSHYSFSS 278
Query: 184 *H 189
H
Sbjct: 279 NH 280
>AK092208-1|BAC03829.1| 638|Homo sapiens protein ( Homo sapiens
cDNA FLJ34889 fis, clone NT2NE2017397, weakly similar to
Rattus norvegicus beta-catenin binding protein mRNA. ).
Length = 638
Score = 34.3 bits (75), Expect = 0.59
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +1
Query: 4 ASPGQQGVSLPGVKQLLEPDTNNVNATTYFETQVRSLNPYTSSCSISNHQQISLM*KLSN 183
AS QQ +S+ Q P + +++ E +P +SCS+SN QQ S S+
Sbjct: 219 ASNSQQSISMQQFSQTSNPSAHFHKCSSHQEGNFNGPSPNMTSCSVSNSQQFSSHYSFSS 278
Query: 184 *H 189
H
Sbjct: 279 NH 280
>AB002306-1|BAA20767.3| 2759|Homo sapiens KIAA0308 protein.
Length = 2759
Score = 34.3 bits (75), Expect = 0.59
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +1
Query: 4 ASPGQQGVSLPGVKQLLEPDTNNVNATTYFETQVRSLNPYTSSCSISNHQQISLM*KLSN 183
AS QQ +S+ Q P + +++ E +P +SCS+SN QQ S S+
Sbjct: 96 ASNSQQSISMQQFSQTSNPSAHFHKCSSHQEGNFNGPSPNMTSCSVSNSQQFSSHYSFSS 155
Query: 184 *H 189
H
Sbjct: 156 NH 157
>X58233-1|CAA41191.1| 50|Homo sapiens 36/8-3 fusion protein with
epitope for anti-lectin antibody protein.
Length = 50
Score = 33.5 bits (73), Expect = 1.0
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -1
Query: 529 RKSWSTFCSSSNARRPHDGWPSSRNDGSSSWHGSW 425
R+ WS SS+ A RPH GW S + G S+ W
Sbjct: 1 RRRWSG-ASSAPAVRPHQGWSQSSHRGDSAHQSPW 34
>X12466-1|CAA31007.1| 92|Homo sapiens protein ( Human mRNA for
snRNP E protein. ).
Length = 92
Score = 32.3 bits (70), Expect = 2.4
Identities = 20/52 (38%), Positives = 29/52 (55%)
Frame = -2
Query: 864 GTFKAFDKHMNLILGDCEEFXKIKSXNSXTADREXXRTLGFVLLRGENIVSL 709
G FD++MNL+L D EE +S T R + LG ++L+G+NI L
Sbjct: 45 GCIIGFDEYMNLVLDDAEEI------HSKTKSR---KQLGRIMLKGDNITLL 87
>M37716-1|AAA90926.1| 92|Homo sapiens small nuclear RNA protein
(snRNP E) protein.
Length = 92
Score = 32.3 bits (70), Expect = 2.4
Identities = 20/52 (38%), Positives = 29/52 (55%)
Frame = -2
Query: 864 GTFKAFDKHMNLILGDCEEFXKIKSXNSXTADREXXRTLGFVLLRGENIVSL 709
G FD++MNL+L D EE +S T R + LG ++L+G+NI L
Sbjct: 45 GCIIGFDEYMNLVLDDAEEI------HSKTKSR---KQLGRIMLKGDNITLL 87
>M21258-1|AAB59365.1| 92|Homo sapiens protein ( Human small
nuclear ribonucleoprotein (snRNP) E gene, exon 5 and Alu
repeats copy N and O. ).
Length = 92
Score = 32.3 bits (70), Expect = 2.4
Identities = 20/52 (38%), Positives = 29/52 (55%)
Frame = -2
Query: 864 GTFKAFDKHMNLILGDCEEFXKIKSXNSXTADREXXRTLGFVLLRGENIVSL 709
G FD++MNL+L D EE +S T R + LG ++L+G+NI L
Sbjct: 45 GCIIGFDEYMNLVLDDAEEI------HSKTKSR---KQLGRIMLKGDNITLL 87
>M15919-1|AAA36621.1| 81|Homo sapiens protein ( Human autoimmune
antigen small nuclear ribonucleoprotein E mRNA. ).
Length = 81
Score = 32.3 bits (70), Expect = 2.4
Identities = 20/52 (38%), Positives = 29/52 (55%)
Frame = -2
Query: 864 GTFKAFDKHMNLILGDCEEFXKIKSXNSXTADREXXRTLGFVLLRGENIVSL 709
G FD++MNL+L D EE +S T R + LG ++L+G+NI L
Sbjct: 34 GCIIGFDEYMNLVLDDAEEI------HSKTKSR---KQLGRIMLKGDNITLL 76
>BC090951-1|AAH90951.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E protein.
Length = 92
Score = 32.3 bits (70), Expect = 2.4
Identities = 20/52 (38%), Positives = 29/52 (55%)
Frame = -2
Query: 864 GTFKAFDKHMNLILGDCEEFXKIKSXNSXTADREXXRTLGFVLLRGENIVSL 709
G FD++MNL+L D EE +S T R + LG ++L+G+NI L
Sbjct: 45 GCIIGFDEYMNLVLDDAEEI------HSKTKSR---KQLGRIMLKGDNITLL 87
>BC002639-1|AAH02639.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E protein.
Length = 92
Score = 32.3 bits (70), Expect = 2.4
Identities = 20/52 (38%), Positives = 29/52 (55%)
Frame = -2
Query: 864 GTFKAFDKHMNLILGDCEEFXKIKSXNSXTADREXXRTLGFVLLRGENIVSL 709
G FD++MNL+L D EE +S T R + LG ++L+G+NI L
Sbjct: 45 GCIIGFDEYMNLVLDDAEEI------HSKTKSR---KQLGRIMLKGDNITLL 87
>AL354707-4|CAH73282.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E-like 1 protein.
Length = 92
Score = 32.3 bits (70), Expect = 2.4
Identities = 20/52 (38%), Positives = 29/52 (55%)
Frame = -2
Query: 864 GTFKAFDKHMNLILGDCEEFXKIKSXNSXTADREXXRTLGFVLLRGENIVSL 709
G FD++MNL+L D EE +S T R + LG ++L+G+NI L
Sbjct: 45 GCIIGFDEYMNLVLDDAEEI------HSKTKSR---KQLGRIMLKGDNITLL 87
>AK128140-1|BAC87294.1| 280|Homo sapiens protein ( Homo sapiens
cDNA FLJ46261 fis, clone TESTI4025062. ).
Length = 280
Score = 30.7 bits (66), Expect = 7.2
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -1
Query: 541 THGTRKSWSTFCSSSNARRPHDGWPSSRNDGSSSWHGSWWARTGSSRNAT 392
THG + ST CS ++ S R+ G+SS SWW+ SS + +
Sbjct: 5 THGMHLTSSTSCSCQSSGTSFTSC-SCRSSGTSSTSRSWWSSGTSSTSCS 53
>AK125824-1|BAC86307.1| 280|Homo sapiens protein ( Homo sapiens
cDNA FLJ43836 fis, clone TESTI4005857. ).
Length = 280
Score = 30.7 bits (66), Expect = 7.2
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -1
Query: 541 THGTRKSWSTFCSSSNARRPHDGWPSSRNDGSSSWHGSWWARTGSSRNAT 392
THG + ST CS ++ S R+ G+SS SWW+ SS + +
Sbjct: 5 THGMHLTSSTSCSCQSSGTSFTSC-SCRSSGTSSTSRSWWSSGTSSTSCS 53
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,020,481
Number of Sequences: 237096
Number of extensions: 1835907
Number of successful extensions: 3728
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 3615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3728
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11159604822
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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