Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_I10
         (877 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92773-2|CAB07132.1|  160|Caenorhabditis elegans Hypothetical pr...    73   4e-13
AL132865-8|CAB60606.2|  102|Caenorhabditis elegans Hypothetical ...    35   0.066
Z69385-6|CAA93428.1|  104|Caenorhabditis elegans Hypothetical pr...    35   0.088
AC084197-12|AAL00875.1|   98|Caenorhabditis elegans Lsm sm-like ...    28   7.6  

>Z92773-2|CAB07132.1|  160|Caenorhabditis elegans Hypothetical
           protein W08E3.1 protein.
          Length = 160

 Score = 72.5 bits (170), Expect = 4e-13
 Identities = 33/58 (56%), Positives = 41/58 (70%)
 Frame = -2

Query: 876 RTFXGTFKAFDKHMNLILGDCEEFXKIKSXNSXTADREXXRTLGFVLLRGENIVSLTI 703
           RTF G FKAFDKHMN++L +CEE  +IK       D E  R LG VL+RGE+IVS+T+
Sbjct: 25  RTFIGFFKAFDKHMNILLAECEEHRQIKPKAGKKTDGEEKRILGLVLVRGEHIVSMTV 82


>AL132865-8|CAB60606.2|  102|Caenorhabditis elegans Hypothetical
           protein Y62E10A.12 protein.
          Length = 102

 Score = 35.1 bits (77), Expect = 0.066
 Identities = 14/57 (24%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
 Frame = -2

Query: 876 RTFXGTFKAFDKHMNLILGDCEEFXKIKSXNSXTAD---REXXRTLGFVLLRGENIV 715
           R   G  +AFD+H+N++L + EE    +  +  T +   ++  R +  + +RG++++
Sbjct: 37  RELRGRLRAFDQHLNMVLSEVEETITTREVDEDTFEEIYKQTKRVVPMLFVRGDSVI 93


>Z69385-6|CAA93428.1|  104|Caenorhabditis elegans Hypothetical
           protein ZK593.7 protein.
          Length = 104

 Score = 34.7 bits (76), Expect = 0.088
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -2

Query: 876 RTFXGTFKAFDKHMNLILGDCEEFXKIKSXNSXTADREXXRTLGFVLLRGENI 718
           R   G  + FD+ +N++L DC E+ +     S   D    R LG ++ RG  I
Sbjct: 32  REASGVLRGFDQLLNMVLDDCREYLRDPQNPSVVGDE--TRQLGLIVARGTAI 82


>AC084197-12|AAL00875.1|   98|Caenorhabditis elegans Lsm sm-like
           protein protein 8 protein.
          Length = 98

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -2

Query: 876 RTFXGTFKAFDKHMNLILGDCEEFXKIKSXNSXTADREXXRTLGFVLLRGENI 718
           R   G  K FD+ +NL++ D  E    ++    T        LG  ++RGEN+
Sbjct: 21  RVIVGLLKGFDQLINLVIEDAHERSYSETEGVLTT------PLGLYIIRGENV 67


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,030,374
Number of Sequences: 27780
Number of extensions: 291276
Number of successful extensions: 772
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)