Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_I08
         (557 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      27   1.4  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   7.5  
SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi...    25   10.0 

>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
 Frame = +3

Query: 330 VIHPQYKRLFRTRLMNNTKAIVIFVFWCFFF----KQKTHFSCRIMYT*FSLTNLSYLLE 497
           ++  Q++RL      ++T  I  F +W FFF         F   I    +    + +   
Sbjct: 51  LVSSQFRRLKLPYHHHHTFTIEAFFYWFFFFFFFFSHCRRFHIAIFIHPYDSNVVPFFCF 110

Query: 498 FFYFQTFIYY 527
           FFYF  F ++
Sbjct: 111 FFYFSLFSFF 120


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +3

Query: 411  CFFFKQKTHFSCRIMYT*FSLTNLSYLLEFFYFQTFIYYYKEKSV 545
            C+ F  + H   R  +T   + +L +LL  FY     Y Y   S+
Sbjct: 1259 CYDFAVQKHGIWRRTFTGLYIVHLLFLLTIFYPCPIAYTYVRNSI 1303


>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +3

Query: 387 AIVIFVFWCFFFKQKTHFSCRIMYT*FSLTNLSYLLEFFYFQTFIY 524
           A+V F F  F FK K      I++    L+ + +L+    F TF+Y
Sbjct: 216 ALVGFAFNLFSFKNKFSSLRSILFRSEGLSFVQFLVCIAVFATFMY 261


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,205,113
Number of Sequences: 5004
Number of extensions: 44845
Number of successful extensions: 100
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)