Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_I07
         (540 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe...    29   0.58 
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    27   1.3  
SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|ch...    27   1.8  
SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces pombe...    25   7.2  

>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 504

 Score = 28.7 bits (61), Expect = 0.58
 Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 11/101 (10%)
 Frame = -2

Query: 452 VITNVVESNIFNKAVIWHSAGT--------FVLGYYNRHVVLNDVAVNGFDCIFIL*HSQ 297
           +I N++E +  N  ++W SAGT          +   +R + ++  +    DC  I   SQ
Sbjct: 110 IIRNLIEQDRCNSMILWGSAGTGKTTLARLIAVTTKSRFIEISATSTTVADCRKIFEDSQ 169

Query: 296 IYQCV--RST*NF-NLIVITTLSQSDLFIYIVHKILLEFVG 183
            Y  +  R T  F + +     +Q D+F+ +V K L+  +G
Sbjct: 170 NYLTLTGRKTIIFLDEVHRFNRAQQDIFLPMVEKGLVTLIG 210


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 405 YDRLIKNIAFYDIGNNDIPHITTTFN 482
           + R   NI  Y I NND PH+   FN
Sbjct: 600 FRRFTMNIGTYIICNNDCPHMVYGFN 625


>SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 43  ILDLICSNIVIIWNVKYFQKCQYKIVKYHK 132
           +L  +C   V++ NVK  Q  + K V YHK
Sbjct: 136 VLSAVCHGPVLLANVKNPQSVEGKTVVYHK 165


>SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -2

Query: 269 NFNLIVITTLSQSDLFIYIVHKILLEFVG*LMLINKHKLL 150
           N  L V+  L+  D  I I HK+ + ++  L LI+  KLL
Sbjct: 134 NMELEVLRALN-FDTHIVIPHKLAIHYLQTLQLIDNKKLL 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,033,697
Number of Sequences: 5004
Number of extensions: 39089
Number of successful extensions: 79
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)