Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_I07
         (540 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41038-2|AAX88827.1|  635|Caenorhabditis elegans Serotonin/octop...    29   2.8  
U41038-1|AAK29709.2|  683|Caenorhabditis elegans Serotonin/octop...    29   2.8  
AF031415-1|AAC15778.1|  635|Caenorhabditis elegans serotonin rec...    29   2.8  
AF031414-1|AAC15827.1|  683|Caenorhabditis elegans serotonin rec...    29   2.8  

>U41038-2|AAX88827.1|  635|Caenorhabditis elegans
           Serotonin/octopamine receptor familyprotein 1, isoform b
           protein.
          Length = 635

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 52  LICSNIVIIWNVKYFQKCQYKIVKYHKI*NL*RSNLCLLIN 174
           LI   I I+W V     C   ++  H   N+ R+N C++ +
Sbjct: 123 LIFIKIAIVWVVTLLVSCPIAVLAMHDTANILRNNQCMIFS 163


>U41038-1|AAK29709.2|  683|Caenorhabditis elegans
           Serotonin/octopamine receptor familyprotein 1, isoform a
           protein.
          Length = 683

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 52  LICSNIVIIWNVKYFQKCQYKIVKYHKI*NL*RSNLCLLIN 174
           LI   I I+W V     C   ++  H   N+ R+N C++ +
Sbjct: 171 LIFIKIAIVWVVTLLVSCPIAVLAMHDTANILRNNQCMIFS 211


>AF031415-1|AAC15778.1|  635|Caenorhabditis elegans serotonin
           receptor protein.
          Length = 635

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 52  LICSNIVIIWNVKYFQKCQYKIVKYHKI*NL*RSNLCLLIN 174
           LI   I I+W V     C   ++  H   N+ R+N C++ +
Sbjct: 123 LIFIKIAIVWVVTLLVSCPIAVLAMHDTANILRNNQCMIFS 163


>AF031414-1|AAC15827.1|  683|Caenorhabditis elegans serotonin
           receptor protein.
          Length = 683

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 52  LICSNIVIIWNVKYFQKCQYKIVKYHKI*NL*RSNLCLLIN 174
           LI   I I+W V     C   ++  H   N+ R+N C++ +
Sbjct: 171 LIFIKIAIVWVVTLLVSCPIAVLAMHDTANILRNNQCMIFS 211


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,081,257
Number of Sequences: 27780
Number of extensions: 215941
Number of successful extensions: 350
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)