Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_I03
         (308 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    29   0.16 
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    27   0.64 
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    25   1.9  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   2.6  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    25   2.6  
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    24   5.9  

>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 29.1 bits (62), Expect = 0.16
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 210 WLLARSKFLIPNILF*YNYSSKCSLKFFYQIH 305
           W+LAR KF   N    YNYS+K  +  F++ +
Sbjct: 408 WMLARPKFSQINTSHLYNYSTKQMISKFWETY 439


>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 27.1 bits (57), Expect = 0.64
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +2

Query: 68  TNTQAGMADQPTTIRLARKIISPLETLXSWRSADNAHVPLLGDILKDLVVS 220
           T   A M+D   +      ++SPLE L SW +AD     L+  + + + +S
Sbjct: 673 TRDSAQMSDSIISSLSDVLVLSPLEVLASWYAADLLDALLMESLSRKVEIS 723


>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 176 HVPLLGDILKDLVVSAK*IPNSKHF 250
           HVP+  DI    +V  K   N KHF
Sbjct: 382 HVPVFNDIYLTKIVKNKATANKKHF 406


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 137  LETLXSWRSADNAHVPLLGDILKDLVVS 220
            +  L  WRSAD+ H+P +   L   V+S
Sbjct: 1108 ISVLHLWRSADDLHLPYITRALLTNVLS 1135


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 12/21 (57%), Positives = 17/21 (80%)
 Frame = -3

Query: 240 ELGIYFALTTKSLRMSPNKGT 178
           E G+ F+L++KSLR+S  KGT
Sbjct: 70  ERGV-FSLSSKSLRLSNRKGT 89


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 125 IISPLETLXSWRSADNAHVPLLGDILKD 208
           I++PLE   +   A   HVP +G I  D
Sbjct: 185 ILNPLENKSACLEAQKTHVPTIGIIDTD 212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,231,182
Number of Sequences: 5004
Number of extensions: 21119
Number of successful extensions: 43
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)