Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_I03
(308 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0816 + 27928812-27930059,27931007-27931111,27931197-279312... 30 0.32
03_06_0084 + 31536286-31536718,31536907-31536983,31537380-315374... 27 3.0
01_05_0318 - 20826377-20826571,20826663-20826764,20826839-208269... 27 4.0
07_03_0997 - 23203166-23203330,23203627-23203693,23203771-232038... 26 6.9
06_01_1160 - 9868340-9868360,9868639-9868986 26 6.9
05_06_0086 - 25447063-25447182,25448082-25448702 26 6.9
12_02_0963 + 24857033-24857500,24857611-24857745,24858430-24858516 25 9.2
04_04_0007 + 22119477-22120004 25 9.2
03_06_0243 + 32598782-32598793,32599037-32599123,32601052-326012... 25 9.2
>03_05_0816 +
27928812-27930059,27931007-27931111,27931197-27931262,
27931337-27931501,27931671-27931745,27931829-27931983,
27932234-27932369,27932454-27932523,27932602-27932729,
27932838-27932894,27933326-27933511,27934031-27934123,
27934488-27934573,27934668-27934734,27934873-27934939,
27935016-27935152,27935618-27935709,27935849-27935915,
27936058-27936078
Length = 1006
Score = 30.3 bits (65), Expect = 0.32
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +1
Query: 34 FYLLVAVMLDVDQHPGWDGRPAHHHQAGEEDHLTSGNLXFLAECR*RSCSFVG 192
F +L+ ++LDV P W + AGE +G+ F EC R VG
Sbjct: 321 FAVLMTMLLDVQDEPAWHAAVSEEEDAGE-----TGSYVFAQECLDRLAIAVG 368
>03_06_0084 +
31536286-31536718,31536907-31536983,31537380-31537428,
31537778-31538048,31540876-31541104,31541511-31541750
Length = 432
Score = 27.1 bits (57), Expect = 3.0
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +1
Query: 106 HQAGEEDHLTSGNL 147
HQ EEDHL +GNL
Sbjct: 352 HQGAEEDHLITGNL 365
>01_05_0318 -
20826377-20826571,20826663-20826764,20826839-20826973,
20827924-20828016,20828072-20828230,20828325-20828929,
20829098-20829119,20829339-20829393,20829426-20829466,
20830250-20830363
Length = 506
Score = 26.6 bits (56), Expect = 4.0
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = -2
Query: 163 TP-PRXQGFQR*DDLPRQPDGGGLVCHPSLGVGQHQ 59
TP P G DD QPD G +C P+ G G Q
Sbjct: 48 TPVPSECGAGHGDDEQHQPDIGTHLCSPAAGFGDQQ 83
>07_03_0997 -
23203166-23203330,23203627-23203693,23203771-23203862,
23204820-23204956,23205050-23205116,23205212-23205278,
23205356-23205441,23206061-23206153,23206337-23206522,
23207316-23207372,23207455-23207582,23207662-23207731,
23207815-23207950,23208378-23208529,23208606-23208680,
23208765-23208929,23209063-23209128,23209229-23209333,
23209929-23210132,23210462-23211715
Length = 1123
Score = 25.8 bits (54), Expect = 6.9
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +1
Query: 34 FYLLVAVMLDVDQHPGWDGRPAHHHQAGE 120
F +L+ ++LDV+ P W AGE
Sbjct: 331 FAVLMQMLLDVEDDPAWHTAETEDEDAGE 359
>06_01_1160 - 9868340-9868360,9868639-9868986
Length = 122
Score = 25.8 bits (54), Expect = 6.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 223 RANNQIFKNVAQQRNMSVICTPP 155
+A Q+ + A RNM VICT P
Sbjct: 84 QAGRQVGRRPASIRNMRVICTTP 106
>05_06_0086 - 25447063-25447182,25448082-25448702
Length = 246
Score = 25.8 bits (54), Expect = 6.9
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = -2
Query: 199 NVAQQRNMSVICTPPRXQGFQR*DDLPRQPDGGGLVCHPSLG-VGQHQALPRQ 44
+ A+QR ++ TPP + + PR+ D G V LG VG+ LPRQ
Sbjct: 107 DAARQRPLNAAATPPLTRSPRPAGGSPRRSDRGSPVREQPLGSVGR---LPRQ 156
>12_02_0963 + 24857033-24857500,24857611-24857745,24858430-24858516
Length = 229
Score = 25.4 bits (53), Expect = 9.2
Identities = 17/42 (40%), Positives = 19/42 (45%)
Frame = +1
Query: 64 VDQHPGWDGRPAHHHQAGEEDHLTSGNLXFLAECR*RSCSFV 189
VD H R A + G D+L NL FLA R CS V
Sbjct: 76 VDHHGAPVRRCAPILREGVTDYLAVDNLAFLAHNRAACCSLV 117
>04_04_0007 + 22119477-22120004
Length = 175
Score = 25.4 bits (53), Expect = 9.2
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +1
Query: 79 GWDGRPAHHHQAGEEDHLTSGN 144
G GRPAHHH+ + + + G+
Sbjct: 132 GMRGRPAHHHRLMQGGYSSGGS 153
>03_06_0243 +
32598782-32598793,32599037-32599123,32601052-32601257,
32601342-32601453,32601628-32601724,32601815-32601924,
32601996-32602153,32602559-32602697,32602776-32602892,
32603084-32603140,32603280-32603351,32603617-32603736,
32603818-32603983,32604067-32604188,32604373-32604447,
32604636-32604775,32604860-32604922,32605002-32605065,
32605161-32605296,32605401-32605474,32605570-32605664,
32605761-32605792,32606344-32606474,32606595-32606827,
32606916-32607723,32607815-32607967
Length = 1192
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Frame = +1
Query: 73 HPGWDG--RPAHHHQAGEEDHLTSGNLXFL 156
H G G RP H+H +E+H T+ L L
Sbjct: 705 HAGIQGTSRPTHYHVLYDENHFTADELQTL 734
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,970,834
Number of Sequences: 37544
Number of extensions: 145259
Number of successful extensions: 299
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 299
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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