Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_I03
         (308 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   2.6  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   4.5  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   4.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   4.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   4.5  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    20   7.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    20   7.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    20   7.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    20   7.8  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +3

Query: 168 ITLMFLCWATF 200
           + L F+CWA F
Sbjct: 276 VILFFICWAPF 286


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 153 LGGVQITLMFLCWATF 200
           L  V IT  F+CWA F
Sbjct: 262 LSAVVITF-FICWAPF 276


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 168 ITLMFLCWATFLKIWLLA 221
           +   F+CWA F    LLA
Sbjct: 291 VVAFFICWAPFHAQRLLA 308


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +3

Query: 144 PXFLGGVQITLMFLCWATFLKIWLLARSKFLI 239
           P F G    T +  CW     I +LA + F +
Sbjct: 95  PIFKGIGYATCVLSCWTNIYYIIILAWALFYL 126


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +3

Query: 144 PXFLGGVQITLMFLCWATFLKIWLLARSKFLI 239
           P F G    T +  CW     I +LA + F +
Sbjct: 148 PIFKGIGYATCVLSCWTNIYYIIILAWALFYL 179


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = -3

Query: 96  WSAIPAWVLVNI 61
           W+A+PA V++ +
Sbjct: 326 WNAVPARVMIGV 337


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = -3

Query: 96  WSAIPAWVLVNI 61
           W+A+PA V++ +
Sbjct: 295 WNAVPARVMIGV 306


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = -3

Query: 96  WSAIPAWVLVNI 61
           W+A+PA V++ +
Sbjct: 346 WNAVPARVMIGV 357


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = -3

Query: 96  WSAIPAWVLVNI 61
           W+A+PA V++ +
Sbjct: 295 WNAVPARVMIGV 306


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,156
Number of Sequences: 438
Number of extensions: 1420
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6471036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)