Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_H24
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual      29   0.80 
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   5.6  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    26   5.6  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    26   5.6  
SPBC1685.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   7.5  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    25   7.5  

>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 478

 Score = 28.7 bits (61), Expect = 0.80
 Identities = 33/137 (24%), Positives = 60/137 (43%), Gaps = 2/137 (1%)
 Frame = -3

Query: 622 NNESLYKLLGGFFSYYG-TFDFEENIICPYLGFPIRKKSFDLFLTNFSLYQHNVAAEVCK 446
           N  SL +LL  FF YYG +F++ ++++    G  + K+            +   A EV  
Sbjct: 260 NKTSLGRLLIDFFYYYGFSFNYLDSVVSVRSGTVLNKQ------------EKGWAMEV-- 305

Query: 445 PLRLDTSLCIQDPFDHSRNCSVNIYPKLVTRIVDLFKSAAETFHKDKKPNFLREILQK-N 269
               + SLC+++PF+ +RN +       V  +   F+ A     ++     L +I ++  
Sbjct: 306 ----NNSLCVEEPFNTARNLANTADNPSVKGLQSEFQRAFRLMSENNACERLCKICEEYQ 361

Query: 268 TENIYQEVKYKHRKTKF 218
             +I  E  Y +  T F
Sbjct: 362 FLDITNEANYGNTNTPF 378


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = +2

Query: 191 LNFLYFIM*KLRLSMFIFNFLIYIFRIFLQNFSQ--EIRF-FILMKCFC 328
           L F +F++  L  S F F+FL ++ +IF+  FS    + F F    C C
Sbjct: 117 LLFFFFLLFFLSFS-FSFSFLFFLSQIFIVYFSSFPILHFLFFFFLCVC 164


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 330 LQKHFIRIKNLIS*EKFCRKI 268
           L K + RIK LI+ E+FC+ +
Sbjct: 19  LDKRYKRIKRLINNEQFCKNV 39


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = -3

Query: 343 LFKSAAETFHKDKKPNFLREILQKNTENIYQEVKYKHRKTKFLHNKVQKVQ 191
           L KS  + F  ++K ++L ++   N     Q VK    + +FL N ++KVQ
Sbjct: 215 LQKSEDKNFKLEEKVDYLSKV---NDVEQSQNVKVFTERIRFLENALEKVQ 262


>SPBC1685.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -3

Query: 373 YPKLVTRIVDLFKSAAETFHKDKKPNFLREILQKNTENI 257
           +PK+  +I  L    AE   + K+PN L  I +   E +
Sbjct: 49  FPKVERKIQSLLDELAEVLFQSKQPNDLTRIRKAIAEQL 87


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1272

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 17/65 (26%), Positives = 34/65 (52%)
 Frame = -3

Query: 448  KPLRLDTSLCIQDPFDHSRNCSVNIYPKLVTRIVDLFKSAAETFHKDKKPNFLREILQKN 269
            K  + + SLCI++  D   + + +    L T +V + + A+   H D+   +LR++L K 
Sbjct: 1147 KDFQQELSLCIENLLDSFLSKTNSYKIALNTVLVRICEEASRNEHSDQ---YLRKLLLKL 1203

Query: 268  TENIY 254
              ++Y
Sbjct: 1204 ITDLY 1208


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,798,983
Number of Sequences: 5004
Number of extensions: 61115
Number of successful extensions: 174
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)