Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_H22
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    30   0.25 
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ...    30   0.33 
SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual         27   2.3  
SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces ...    26   5.3  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   7.1  
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    25   9.3  

>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 569 HHLARHMVACFLTRGDLWISWEEGAKIFEDYLLDYDW 459
           H  A+++V    TRG + I+   G +I+ D +L  +W
Sbjct: 399 HRYAKNLVESVFTRGHILITTYAGLRIYGDLILPREW 435


>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +3

Query: 132 SLXCFLFPIQFICSCHFLYILFMYCIMVDY--SFRIVFSYNTSCISLN*LRCFPWFIYI 302
           +L CF     ++   +F+Y+L +YC   ++   F  +    ++ IS+  L   PW IY+
Sbjct: 184 ALICFKHIFLYVAPAYFVYLLRVYCFTPNFRPQFLNILKLGSTVISIFLLAFGPW-IYM 241


>SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 413

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = -3

Query: 521 LWISWEEGAKIFEDYLLDYDWSLN-AGNWMWLSASAFFYKYFRVYS 387
           +W + +E    F   +L   W+L     W WL  +AF    F VYS
Sbjct: 274 VWCTNKEKYVNFVKKVLFKKWNLTLVSTWTWLKITAFGEPLFDVYS 319


>SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 306

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = +3

Query: 129 WSLXCFLFPIQFICSCHFLYILFMYCIMVDYSFRIVFSYNTSCISLN*LRCFPWFIYIFS 308
           W+   F F   FI   H + +   Y   ++ S R+ F +  S + L+ +    WF+Y   
Sbjct: 154 WAYYGFSFVGYFIALAHSVVLHKKYASRLETSARLGFLW--SIVYLHVI----WFLYYAC 207

Query: 309 WIL 317
           WIL
Sbjct: 208 WIL 210


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -3

Query: 572  IHHLARHMVACFLTRGDLWISWEEGAKIFEDYLLDYDWSLNA 447
            I H+A ++ A   + G L+ +W  GA   E  +  + W L A
Sbjct: 2026 IQHIAAYVYAISSSTGSLYFAWNFGA---EGGIATHHWILRA 2064


>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 536 LTRGDLWISWEEGAKIFEDYLLDYDWSLNAGNWMW 432
           +  G + I+W +  +I E +  +YDW L A   +W
Sbjct: 713 IENGKVNINWPQ-KRISEFFQKNYDWDLLASRSIW 746


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,526,933
Number of Sequences: 5004
Number of extensions: 51520
Number of successful extensions: 119
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)