Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_H22
         (646 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021491-1|CAA16373.2|  319|Caenorhabditis elegans Hypothetical ...    29   2.8  
U53333-12|AAA96165.1|  387|Caenorhabditis elegans Nuclear hormon...    28   4.9  
Z77132-6|CAB00861.3| 1406|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AL021479-2|CAA16323.1|  298|Caenorhabditis elegans Hypothetical ...    27   8.6  
AJ276018-1|CAC81666.1| 1122|Caenorhabditis elegans putative TRP ...    27   8.6  

>AL021491-1|CAA16373.2|  319|Caenorhabditis elegans Hypothetical
           protein Y44A6B.1 protein.
          Length = 319

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 28/93 (30%), Positives = 38/93 (40%)
 Frame = +3

Query: 177 HFLYILFMYCIMVDYSFRIVFSYNTSCISLN*LRCFPWFIYIFSWILL*FRYILLNVNSL 356
           H LY+ F+  I   Y+   VF       +   L  +   + IFSWILL            
Sbjct: 91  HPLYLTFLMSIQRIYA---VFQPFNQHFTNGKLWGYCAIVAIFSWILL------------ 135

Query: 357 FISFLTKCHWTINSEIFVKECRS*QPHPITSIQ 455
            I F + C   IN  +F       + HPITS+Q
Sbjct: 136 LIPFFSHCPVNINQRVFSFAVACQERHPITSLQ 168


>U53333-12|AAA96165.1|  387|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 78 protein.
          Length = 387

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/75 (20%), Positives = 35/75 (46%)
 Frame = +2

Query: 257 HFFELTEVLSMVHIYILVDTSLIQVHTS*CKLPLYQFSDQMPLDYKL*NICKRMQKLTTT 436
           HFF++   L+        D+ L+ + +  CK+P ++     P D++     ++ Q+    
Sbjct: 134 HFFKMDSNLNKSRRMAFTDSRLLDIFSGVCKMP-FEKHQLQPFDFRSYRGYQK-QEYVML 191

Query: 437 SNYQHSMTSHNQVDN 481
            NY +++    ++ N
Sbjct: 192 FNYANTLPGFQELSN 206


>Z77132-6|CAB00861.3| 1406|Caenorhabditis elegans Hypothetical protein
            F54D1.5 protein.
          Length = 1406

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = -3

Query: 452  NAGNWMWLSASAFFYK-YFRVYSPVAFGQ 369
            N  +W WL     FYK YF +Y  V  G+
Sbjct: 1060 NVKDWHWLLVRNIFYKPYFMLYGEVYAGE 1088


>AL021479-2|CAA16323.1|  298|Caenorhabditis elegans Hypothetical
           protein Y22F5A.4 protein.
          Length = 298

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 479 YLLDYDWSLNAGNWMWLSASAFFYKYFRV 393
           Y   YDWS   GNW  LS+    + Y+ V
Sbjct: 189 YTNQYDWSQITGNWATLSSDVLLW-YWHV 216


>AJ276018-1|CAC81666.1| 1122|Caenorhabditis elegans putative TRP
           homologous cationchannel protein.
          Length = 1122

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = -3

Query: 452 NAGNWMWLSASAFFYK-YFRVYSPVAFGQ 369
           N  +W WL     FYK YF +Y  V  G+
Sbjct: 776 NVKDWHWLLVRNIFYKPYFMLYGEVYAGE 804


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,738,954
Number of Sequences: 27780
Number of extensions: 275222
Number of successful extensions: 709
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)