Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_H22
         (646 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.    233   1e-63
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               23   2.5  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score =  233 bits (570), Expect = 1e-63
 Identities = 98/164 (59%), Positives = 124/164 (75%), Gaps = 1/164 (0%)
 Frame = -3

Query: 641 WAEGXTGYPFVDAIMRQLXQEGWIHHLARHMVACFLTRGDLWISWEEGAKIFEDYLLDYD 462
           WA G TG+P++DAIM QL +EGWIHHLARH VACFLTRGDLWISWEEG K+F++ LLD D
Sbjct: 347 WANGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFDELLLDAD 406

Query: 461 WSLNAGNWMWLSASAFFYKYFRVYSPVAFGQKTDKEGVYIKKYVPELKKYPREYIYEPWK 282
           WS+NAG WMWLS S+FF ++F  Y PV FG+K D  G YI++Y+P LK +P  YI+EPW 
Sbjct: 407 WSVNAGMWMWLSCSSFFQQFFHCYCPVRFGRKADPNGDYIRRYLPVLKNFPTRYIHEPWN 466

Query: 281 APQSIQRNAGCIIGEHYPKRIVNHDTIHKENIQKMATAY-KLNR 153
           AP ++QR A CIIG+ Y   +VNH    + NI++M   Y +LN+
Sbjct: 467 APLNVQRAAKCIIGKDYSLPMVNHSKSSRINIERMKQVYQQLNK 510


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +1

Query: 178 IFCIFSLCIVSWLTIR 225
           +  +F+LCIVS++ +R
Sbjct: 5   VILLFTLCIVSYMMVR 20


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,669
Number of Sequences: 438
Number of extensions: 3412
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)