Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_H19
(757 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81106-1|CAB03221.2| 352|Caenorhabditis elegans Hypothetical pr... 162 2e-40
Z29095-13|CAA82357.1| 810|Caenorhabditis elegans Hypothetical p... 29 3.6
Z22181-15|CAA80191.1| 810|Caenorhabditis elegans Hypothetical p... 29 3.6
Z22181-14|CAI46590.1| 516|Caenorhabditis elegans Hypothetical p... 29 3.6
U80443-7|AAB37678.2| 393|Caenorhabditis elegans Coenzyme q (ubi... 29 3.6
AF326940-1|AAG49390.1| 810|Caenorhabditis elegans replication l... 29 3.6
AC025721-13|AAR85897.1| 139|Caenorhabditis elegans Hypothetical... 29 4.7
Z81050-12|CAN86586.1| 420|Caenorhabditis elegans Hypothetical p... 28 6.2
Z81050-11|CAN86585.1| 399|Caenorhabditis elegans Hypothetical p... 28 6.2
Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr... 28 8.2
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 28 8.2
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p... 28 8.2
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 28 8.2
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 28 8.2
>Z81106-1|CAB03221.2| 352|Caenorhabditis elegans Hypothetical
protein R06C1.2 protein.
Length = 352
Score = 162 bits (394), Expect = 2e-40
Identities = 89/249 (35%), Positives = 142/249 (57%), Gaps = 7/249 (2%)
Frame = -1
Query: 745 VEMFQAYCIVXDDIMDGSSVRRGMPCWYRRPEVGITCAFNDSLLIHSSLFEFLKTNFRTN 566
+E+ Q++ ++ DDIMD S RRG PCW+RR VG++ A ND+ ++ S + + L+ +
Sbjct: 88 LEIIQSFYLIADDIMDNSETRRGKPCWFRREGVGMS-AINDAFIMDSFVEDILRLALPGH 146
Query: 565 PNYIKMFELFNETLWRTSMGQHLDHVTGNRKTDYSSFTLDRXXXXXXXXXXXXXYNLPVS 386
N ++ E + ++ +T +GQ LD + N+ SSFT DR P+
Sbjct: 147 VNLDRLCEAYRKSKQKTLIGQFLDTSSVNQ---ISSFTWDRYELMVENKTSHYTVFHPIQ 203
Query: 385 LGLLLAENVDEKIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCTWLA 206
+ L++++ + + S + + +IG +FQ QDDF+D +GD TGK+GTDIQ+ KCTWLA
Sbjct: 204 MALIISDVL--AYHGSVKKVAYQIGFLFQSQDDFLDVYGDPKITGKIGTDIQDGKCTWLA 261
Query: 205 VQALQRCTEAQR-------TVFKACYGSSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDN 47
V+ALQ+ + FK +GS +P VE+IKR+Y++L L Q ++ EK
Sbjct: 262 VRALQKMHKTPEKWGAKLIEEFKTSFGSVDPEKVEKIKRIYDELQLKQEFRRFEKHFSGE 321
Query: 46 IIRQIENIP 20
I + I IP
Sbjct: 322 IKKSISEIP 330
>Z29095-13|CAA82357.1| 810|Caenorhabditis elegans Hypothetical
protein ZK632.1a protein.
Length = 810
Score = 29.1 bits (62), Expect = 3.6
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = -2
Query: 294 RTIS*TASVMK*KLVKLVQIYKSANVLGWQFKRCSAVLKHNVQYSKPVM 148
+TIS T + +K L I +AN + ++ R S LK+NVQ S P+M
Sbjct: 481 QTISITKAGVKATLNARASILAAANPVNGRYDR-SRPLKYNVQMSAPIM 528
>Z22181-15|CAA80191.1| 810|Caenorhabditis elegans Hypothetical
protein ZK632.1a protein.
Length = 810
Score = 29.1 bits (62), Expect = 3.6
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = -2
Query: 294 RTIS*TASVMK*KLVKLVQIYKSANVLGWQFKRCSAVLKHNVQYSKPVM 148
+TIS T + +K L I +AN + ++ R S LK+NVQ S P+M
Sbjct: 481 QTISITKAGVKATLNARASILAAANPVNGRYDR-SRPLKYNVQMSAPIM 528
>Z22181-14|CAI46590.1| 516|Caenorhabditis elegans Hypothetical
protein ZK632.1b protein.
Length = 516
Score = 29.1 bits (62), Expect = 3.6
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = -2
Query: 294 RTIS*TASVMK*KLVKLVQIYKSANVLGWQFKRCSAVLKHNVQYSKPVM 148
+TIS T + +K L I +AN + ++ R S LK+NVQ S P+M
Sbjct: 187 QTISITKAGVKATLNARASILAAANPVNGRYDR-SRPLKYNVQMSAPIM 234
>U80443-7|AAB37678.2| 393|Caenorhabditis elegans Coenzyme q
(ubiquinone) biosynthesisprotein 1 protein.
Length = 393
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -1
Query: 376 LLAENVDEKIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGK-VGTDIQ 230
+LA+ D K+++ A + +G FQ+ DD +D + GK V D++
Sbjct: 256 ILADGSDLKLHEIAFEYGRNLGIAFQLADDLLDFIATADEMGKPVAADLK 305
>AF326940-1|AAG49390.1| 810|Caenorhabditis elegans replication
licensing factor MCM2/3/5-type protein protein.
Length = 810
Score = 29.1 bits (62), Expect = 3.6
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = -2
Query: 294 RTIS*TASVMK*KLVKLVQIYKSANVLGWQFKRCSAVLKHNVQYSKPVM 148
+TIS T + +K L I +AN + ++ R S LK+NVQ S P+M
Sbjct: 481 QTISITKAGVKATLNARASILAAANPVNGRYDR-SRPLKYNVQMSAPIM 528
>AC025721-13|AAR85897.1| 139|Caenorhabditis elegans Hypothetical
protein Y48G8AL.15 protein.
Length = 139
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -1
Query: 85 QIY-KHQEKAMYDNIIRQIENIPIEAARV 2
Q+Y +HQ K YD ++R I + P+ A RV
Sbjct: 56 QLYAQHQGKFFYDRLVRHISSGPVIAMRV 84
>Z81050-12|CAN86586.1| 420|Caenorhabditis elegans Hypothetical
protein C50B6.14b protein.
Length = 420
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -1
Query: 127 VERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIENI 23
+ER +R+ +DLHL I K DNI++ IE++
Sbjct: 383 LERQQRMQKDLHLLYIAPLVAKTPKDNIVQIIEDV 417
>Z81050-11|CAN86585.1| 399|Caenorhabditis elegans Hypothetical
protein C50B6.14a protein.
Length = 399
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -1
Query: 127 VERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIENI 23
+ER +R+ +DLHL I K DNI++ IE++
Sbjct: 362 LERQQRMQKDLHLLYIAPLVAKTPKDNIVQIIEDV 396
>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical protein
K08E5.3b protein.
Length = 3183
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -1
Query: 568 NPNYIKMFELFNETLWRTSMGQHLDHVTGNRKTDY 464
+P+Y+++ ELF + + RT G L N K DY
Sbjct: 2318 SPSYVEIVELFEKNMARTFGGTSLAPRYVNTKVDY 2352
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical protein
K08E5.3a protein.
Length = 3767
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -1
Query: 568 NPNYIKMFELFNETLWRTSMGQHLDHVTGNRKTDY 464
+P+Y+++ ELF + + RT G L N K DY
Sbjct: 2902 SPSYVEIVELFEKNMARTFGGTSLAPRYVNTKVDY 2936
>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
protein K08E5.3b protein.
Length = 3183
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -1
Query: 568 NPNYIKMFELFNETLWRTSMGQHLDHVTGNRKTDY 464
+P+Y+++ ELF + + RT G L N K DY
Sbjct: 2318 SPSYVEIVELFEKNMARTFGGTSLAPRYVNTKVDY 2352
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -1
Query: 568 NPNYIKMFELFNETLWRTSMGQHLDHVTGNRKTDY 464
+P+Y+++ ELF + + RT G L N K DY
Sbjct: 2902 SPSYVEIVELFEKNMARTFGGTSLAPRYVNTKVDY 2936
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane cell
adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -1
Query: 568 NPNYIKMFELFNETLWRTSMGQHLDHVTGNRKTDY 464
+P+Y+++ ELF + + RT G L N K DY
Sbjct: 2902 SPSYVEIVELFEKNMARTFGGTSLAPRYVNTKVDY 2936
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,735,261
Number of Sequences: 27780
Number of extensions: 370863
Number of successful extensions: 1002
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -