Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_H08
         (682 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21324-8|AAA62561.1|  190|Caenorhabditis elegans Hypothetical pr...    39   0.003
Z72506-5|CAA96616.2|  259|Caenorhabditis elegans Hypothetical pr...    31   0.58 
Z75546-3|CAA99891.1|  581|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z68316-2|CAA92681.1|  352|Caenorhabditis elegans Hypothetical pr...    30   1.3  
AF039716-9|AAB96734.2|  548|Caenorhabditis elegans Hypothetical ...    30   1.3  
AC024798-12|AAK29920.2| 1725|Caenorhabditis elegans Hypothetical...    30   1.8  
U64836-3|AAG24058.1|  175|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U23168-11|AAC38811.2|  454|Caenorhabditis elegans Hypothetical p...    28   7.1  
Z30423-4|CAA83013.2| 1234|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>U21324-8|AAA62561.1|  190|Caenorhabditis elegans Hypothetical
           protein C35D10.5 protein.
          Length = 190

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
 Frame = -1

Query: 301 YDEG-LSDDKILAAAIWRRFYSLSENTDVENVEKIVSFIRRQILILDKISSEEL 143
           YDEG L DD++LA AIWR  Y ++   D  ++ K+V+++R  +  L+   + ++
Sbjct: 123 YDEGFLHDDRVLAGAIWRCLY-MNREVDPIHLLKVVTYMRSTVAWLETQDTNQI 175


>Z72506-5|CAA96616.2|  259|Caenorhabditis elegans Hypothetical
           protein F07A5.4 protein.
          Length = 259

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 13/30 (43%), Positives = 22/30 (73%)
 Frame = -2

Query: 399 SDGWIRTELVQIHQLQRNKYQSSLNNFKLP 310
           S GWI  + +QI++LQ N+++  LN+ +LP
Sbjct: 19  SIGWIFYQNIQINELQINRHKRELNSNRLP 48


>Z75546-3|CAA99891.1|  581|Caenorhabditis elegans Hypothetical
           protein R05D11.4 protein.
          Length = 581

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 232 ENTDVENVEKIVSFIRRQILILDKISSEELKW 137
           E TD+++ + +VS   R +  LDKI +  L+W
Sbjct: 241 EETDIQHADILVSTPNRIVFHLDKIDTSSLRW 272


>Z68316-2|CAA92681.1|  352|Caenorhabditis elegans Hypothetical
           protein K08E4.3 protein.
          Length = 352

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +1

Query: 367 LHQFC-PDPSIRRLS*TSLHSYLQQQLCCVLDKSYCT 474
           L  FC PDPS  +   T L  Y  ++ CC  D   CT
Sbjct: 233 LSGFCSPDPSFGKPCSTILGDYFSKRFCCKSDPMECT 269


>AF039716-9|AAB96734.2|  548|Caenorhabditis elegans Hypothetical
           protein W03G9.7 protein.
          Length = 548

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 23/125 (18%), Positives = 55/125 (44%), Gaps = 1/125 (0%)
 Frame = -1

Query: 574 YLKETKMLNSRVIAQVLLQQRHKIRNICNPGIIKCNKIYREHS-TVAAEDSYVKKFMKAV 398
           YLKE       ++ Q  +Q+   I  +     +K  +IY++ +  + A      K ++A+
Sbjct: 157 YLKEKAEYEDAMVRQETVQKELNIARVNYDNAVKIQEIYKQQTDNLNALYEEQDKMLEAI 216

Query: 397 GWMDQDRTGANPSIAKKQVSELSEQFQAALVAYDEGLSDDKILAAAIWRRFYSLSENTDV 218
                D      ++ + +V ++ +  Q   +A  +  +   +L  A+ +  + ++   DV
Sbjct: 217 --FGTDYASEKENVLEGEVDDMVDWQQRVSLAMFKWANGRVLLVHALTQLTFGINRWQDV 274

Query: 217 ENVEK 203
           + +EK
Sbjct: 275 QKIEK 279


>AC024798-12|AAK29920.2| 1725|Caenorhabditis elegans Hypothetical
           protein Y48G9A.1 protein.
          Length = 1725

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
 Frame = -1

Query: 304 AYDEGLSDDKILAAAIWRRFYSLSENTDVE-NVEKIVSFIRRQIL 173
           A+++ LS+ + +AA I    YSL+EN D+E  +  +V  ++R +L
Sbjct: 683 AFEDRLSETRRVAAQIISNIYSLTENKDMEPYLAHMVPGLQRSLL 727


>U64836-3|AAG24058.1|  175|Caenorhabditis elegans Hypothetical
           protein F10G2.4 protein.
          Length = 175

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 10/47 (21%), Positives = 23/47 (48%)
 Frame = -3

Query: 644 Q*NETFTLNKVNFLKSKFINQWKLSQRNKNAEQPSNSPSIVTTTTQN 504
           Q +++F ++  +      +  WK  + N  +E PS+  +  T+T  +
Sbjct: 37  QRDDSFNISPASSSPDMLVETWKSDEENAKSESPSSQSTTATSTNDD 83


>U23168-11|AAC38811.2|  454|Caenorhabditis elegans Hypothetical
           protein B0228.8 protein.
          Length = 454

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -3

Query: 629 FTLNKVNFLKSKFINQWKL 573
           F  N +NFLKSK  N WKL
Sbjct: 69  FNENLLNFLKSKSENDWKL 87


>Z30423-4|CAA83013.2| 1234|Caenorhabditis elegans Hypothetical
           protein T20G5.5 protein.
          Length = 1234

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = +2

Query: 383 LIHPSDGFHKLLYIAIFSSNCAVFSINLIALDDSRVTNISNFVSLL*QYLGYYSAVQHFC 562
           +++P D F+ L+   I S NC+  ++ +  L    V N+   V+L   Y+   S+   FC
Sbjct: 1   MLYPFDSFNVLVPWKIISYNCSE-NVEIFILPIPHVNNLPVTVNL--NYIAVLSSALTFC 57


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,888,330
Number of Sequences: 27780
Number of extensions: 268443
Number of successful extensions: 720
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)