Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_H04
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    31   0.22 
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    29   0.88 
SPAC24C9.12c |||glycine hydroxymethyltransferase |Schizosaccharo...    27   3.5  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   8.2  

>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
 Frame = +3

Query: 177 SREKYKLYSNNESISFIYIKILP---HYFRVYRSFSSPVICRLSYLNHMTVFIFPRY*FI 347
           S   Y LY NN  + F+Y+ ++      F +Y S  +     + +++ +T  + P     
Sbjct: 67  SLSNYVLYKNNPLVVFLYLALITIGIASFFIYGSSLTQKFSIIDWISVLTSVLLPYISLY 126

Query: 348 IALVATRNKIG--NWNQ 392
           IA  +   KI   NWN+
Sbjct: 127 IAAKSNPGKIDLKNWNE 143


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +1

Query: 205 ITNPLVLFTLKSYRTI-FESTVAFQAPSSVDSLI*IT*LYLFFRDINS 345
           +T PL++  L    T+ F   +  Q  S + SL+ +  LYL F D+++
Sbjct: 538 VTFPLIITELSQLETLNFSHNLLSQISSKIGSLVKLKHLYLQFNDLSN 585


>SPAC24C9.12c |||glycine hydroxymethyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 651 VDVSHISGTFYDPLHPDMMVYRDGVTRNTIRAMR 550
           VD++HISG     + P    Y D VT  T +++R
Sbjct: 213 VDMAHISGLVSAGVIPSPFEYADVVTTTTHKSLR 246


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -2

Query: 684 FSDIASDVDND-VDVSHISGTFYDPLHPDMMVY 589
           FS +AS+   D V  +H  GTF +  H D ++Y
Sbjct: 665 FSTLASNGAADMVTQTHSEGTFSNSTHGDWLIY 697


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,838,902
Number of Sequences: 5004
Number of extensions: 58210
Number of successful extensions: 137
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)