Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_H04
         (718 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93377-8|CAE17791.1|  318|Caenorhabditis elegans Hypothetical pr...    31   0.62 
Z49153-1|CAA89022.1|  293|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z68003-2|CAA91976.2|  560|Caenorhabditis elegans Hypothetical pr...    28   5.8  

>Z93377-8|CAE17791.1|  318|Caenorhabditis elegans Hypothetical
           protein F13A7.12 protein.
          Length = 318

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 25/95 (26%), Positives = 42/95 (44%)
 Frame = -2

Query: 708 FSTEAPNVFSDIASDVDNDVDVSHISGTFYDPLHPDMMVYRDGVTRNTIRAMRPLSTVYP 529
           FS+    VF D A D+D+D + S I   FY  + P +  +R    R+     +       
Sbjct: 37  FSSSQAEVFEDDA-DIDSDKEASPIFKAFYKCVRPKLEPFRG---RHNDFWFKFAEVTAD 92

Query: 528 CAGVSMYGNMDTMPSQSRNIDARFTRSRCKEEQST 424
           C  +  Y  ++ MPS +++    F   + K+E  T
Sbjct: 93  CDELKEYKALEIMPSMNKDETKYFAYPK-KDENLT 126


>Z49153-1|CAA89022.1|  293|Caenorhabditis elegans Hypothetical
           protein C32A9.1 protein.
          Length = 293

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +1

Query: 493 SVHITIHTNACTWIYCGEWSHSSYSVSGYTISIHHHV 603
           SV I +       + C EW+ + YS+SG+TI + +++
Sbjct: 129 SVTIHVQITPIFRLGCAEWAKNVYSLSGHTIILENNL 165


>Z68003-2|CAA91976.2|  560|Caenorhabditis elegans Hypothetical
           protein E02H4.2 protein.
          Length = 560

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +3

Query: 273 SSPVICRLSYLNHMTVFIFP 332
           SSP +  L+YL+H+T F+FP
Sbjct: 174 SSPNLKDLNYLDHLTPFLFP 193


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,508,276
Number of Sequences: 27780
Number of extensions: 313665
Number of successful extensions: 768
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)