Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_H03
         (468 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr 1...    26   2.5  
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi...    26   3.3  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   5.8  

>SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 455 SKIRYLVYTNLYSKFHXIYQTLKLRRRYFKD 363
           ++ R +VY  +   F   Y  L LR++YF+D
Sbjct: 292 NETRLIVYEGVPHCFWVYYPMLSLRKKYFED 322


>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 606

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
 Frame = -1

Query: 459 LIQD*IPSLHKSILEIPXNISNFKTSSSIF*RQS------TKNRKIICIKNSNLR 313
           ++ D IPSL  +I      ISN KT  S+  R++         R+I  +K SNL+
Sbjct: 499 IVSDRIPSLKFAIRAAETYISNLKTPRSLISRKAVWRMRPASVRQINFLKKSNLK 553


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -3

Query: 202  QP*HLILSKLFQLHFFVVLPSDRTTFVLCHLLIYIV 95
            QP   ++ K+ +L+FF         F LCHLL++++
Sbjct: 1760 QPSRELICKMTELNFFAA------DFFLCHLLLFLM 1789


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,672,658
Number of Sequences: 5004
Number of extensions: 31044
Number of successful extensions: 79
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)