Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_H03
         (468 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical pr...    27   5.1  
Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical pr...    27   5.1  
U40800-2|AAA81489.2|  137|Caenorhabditis elegans Hypothetical pr...    27   6.7  
U23454-8|ABS19473.1|  153|Caenorhabditis elegans Hypothetical pr...    27   6.7  

>Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical protein
            F25C8.3b protein.
          Length = 3175

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -3

Query: 223  TDNVLKLQP*HLILSKLFQLH-FFVVLPS 140
            T N+LK  P H+I  ++F LH  F  LPS
Sbjct: 2156 THNILKYSPQHVIAQRVFFLHDEFTHLPS 2184


>Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical protein
            F25C8.3a protein.
          Length = 3184

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -3

Query: 223  TDNVLKLQP*HLILSKLFQLH-FFVVLPS 140
            T N+LK  P H+I  ++F LH  F  LPS
Sbjct: 2165 THNILKYSPQHVIAQRVFFLHDEFTHLPS 2193


>U40800-2|AAA81489.2|  137|Caenorhabditis elegans Hypothetical
           protein D2096.5 protein.
          Length = 137

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 1   GLXKLEYKIYYILEILCNFILTKHFQSHSFYKQYKLTSG 117
           GL + EY+IYY++E  C     K  +S    K + + +G
Sbjct: 86  GLFQYEYEIYYLIEHNCTPAGNKKKESKINVKSFPVING 124


>U23454-8|ABS19473.1|  153|Caenorhabditis elegans Hypothetical
           protein C10A4.9 protein.
          Length = 153

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +1

Query: 22  KIYYILEILCNFILTKHFQSHSFYKQYKLTSGKVQKLFYHLATPRK 159
           KI  I+ IL ++++     + SFYK+  L  G  +  FY++++  K
Sbjct: 99  KIAVIILILFSWLVLSILLASSFYKKNTLKIGNTRGYFYNVSSISK 144


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,836,753
Number of Sequences: 27780
Number of extensions: 161765
Number of successful extensions: 345
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)