Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_G24
         (563 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos...    27   1.4  
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    27   1.9  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    26   3.3  
SPAC630.10 |||conserved fungal protein|Schizosaccharomyces pombe...    26   3.3  
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz...    26   4.4  

>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 400

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +1

Query: 106 PLNPTXPVGSSWKVMYMRSVGTPSSFSTN 192
           P+NP  P  SS  +   R+  TP SFSTN
Sbjct: 324 PVNPITPNYSSIPLPAERNPKTPQSFSTN 352


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -1

Query: 488 INRRLLV*NTTII*NYIMPHFRIETNISRSKIPTDFVVKAIPVLAK 351
           +NR L    TT   N ++PH+  + ++   K+  DFV     +LAK
Sbjct: 612 VNRTLKF--TTAKYNGLVPHYLTDPSVGAGKLKADFVKDVNALLAK 655


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 465 KHNNNLKLYNASL*NRNQHFKIK 397
           K +N ++LY+  L NRN+  KIK
Sbjct: 4   KQDNEVELYSIDLKNRNESAKIK 26


>SPAC630.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 199 RTLACFLFCSTPREPMDIRLAMAQGSVD 282
           RT  CF +C+  +EP D+ L +   SVD
Sbjct: 90  RTTPCFSYCARLKEPKDL-LEIGSVSVD 116


>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 18  EAHHFSTIYPHGLDIXXYNGLSKDRVE 98
           EAH    I P G  I  Y G+S D V+
Sbjct: 364 EAHSIGAIGPRGGGICDYFGISTDHVD 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,386,668
Number of Sequences: 5004
Number of extensions: 49964
Number of successful extensions: 129
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)