Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_G23
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.10 |||pyridoxine-pyridoxal-pyridoxamine kinase|Schizosacc...    27   1.6  

>SPCC18.10 |||pyridoxine-pyridoxal-pyridoxamine
           kinase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 340

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
 Frame = -3

Query: 524 FAKISGCXI*XGSDIMKTTQVAQYALRLTYS--QQANREKMMTRSALLLATIGLGLSTSS 351
           F  +SG     G D+     +A+Y   L     QQ++  K   R  +L   +G  LS   
Sbjct: 219 FPSLSGVFTGTG-DLFSGLLLAKYREELDKRKHQQSDETKQTKRPTVLACAVGQVLSCMH 277

Query: 350 VRQMILNQSRRV*DKPVLPQQPAGASLSQTIDNAKTKRLLKKNS*MHPRRAIY 192
               +L  ++   D+ +L + P  AS    + NA+  RL++  + +  +++IY
Sbjct: 278 T---VLVNTKTYADE-ILLEDPKIASDEFLLSNARELRLIQSRTALLSKKSIY 326


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,192,498
Number of Sequences: 5004
Number of extensions: 41289
Number of successful extensions: 87
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)