Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_G20
         (559 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...   122   4e-29
SPBC29A3.10c |atp14||F1-ATPase subunit H |Schizosaccharomyces po...    25   5.7  

>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score =  122 bits (294), Expect = 4e-29
 Identities = 57/117 (48%), Positives = 79/117 (67%), Gaps = 2/117 (1%)
 Frame = -1

Query: 373 HRRLSPNIEIGRI*PPSRITP--FNPFQIPLLNTIILIRSGVTVT*AHHSLIENNFSQTK 200
           H  LSP  E+G + PP  I     +P ++PLLNT+IL+ SG ++T AH+SLI  N     
Sbjct: 113 HSSLSPTFELGAVWPPVGIADKTIDPLEVPLLNTVILLTSGASLTYAHYSLIARNRENAL 172

Query: 199 QRLFLTILLGFYFTILQAYEYIEASFTIADRIYGSTFFIATGFHGIHVIIGTLLXLI 29
           + L++TI L F F   QAYEY  A FTI+D +YG++F+ ATG HGIH+I+GT+L L+
Sbjct: 173 KGLYMTIALSFLFLGGQAYEYWNAPFTISDSVYGASFYFATGLHGIHIIVGTILLLV 229



 Score = 28.3 bits (60), Expect = 0.81
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = -3

Query: 530 LXTAYQ**RDISREGTYQGKHTILVNKGLR*G 435
           L T Y   RD+S E    G HT  V KGL+ G
Sbjct: 61  LATMYLWFRDMSTEANIHGAHTKAVTKGLKIG 92


>SPBC29A3.10c |atp14||F1-ATPase subunit H |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 103

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = -1

Query: 226 IENNFSQTKQRLFLTILLGFYFTILQAYE 140
           +  ++S T  RL++ ++ G Y + L++Y+
Sbjct: 8   LSRSYSTTSPRLYVDVVQGLYISSLKSYK 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,827,651
Number of Sequences: 5004
Number of extensions: 30819
Number of successful extensions: 72
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)