Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_G13
         (614 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U12193-1|AAB97608.1|  218|Homo sapiens voltage-gated sodium chan...    30   5.6  
L16242-1|AAA61277.1|  218|Homo sapiens voltage-gated sodium chan...    30   5.6  
L10338-1|AAA60391.1|  218|Homo sapiens sodium channel beta-1 sub...    30   5.6  
DQ677665-1|ABQ01236.1|  218|Homo sapiens sodium channel beta-1 s...    30   5.6  
BT019923-1|AAV38726.1|  218|Homo sapiens sodium channel, voltage...    30   5.6  
BC067122-1|AAH67122.1|  218|Homo sapiens sodium channel, voltage...    30   5.6  
BC021266-1|AAH21266.2|  186|Homo sapiens SCN1B protein protein.        30   5.6  
AY391842-1|AAR25552.1|  268|Homo sapiens voltage gated sodium ch...    30   5.6  

>U12193-1|AAB97608.1|  218|Homo sapiens voltage-gated sodium channel
           beta-1 subunit protein.
          Length = 218

 Score = 30.3 bits (65), Expect = 5.6
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 292 ITYNRHDSEDDCHILVSYFMEIFVYNNILVFSSHVEMYVK 411
           +TYN H  + +CH+    F E + +N  +V   H+E+  K
Sbjct: 111 VTYN-HSGDYECHVYRLLFFENYEHNTSVVKKIHIEVVDK 149


>L16242-1|AAA61277.1|  218|Homo sapiens voltage-gated sodium channel
           type I, beta subunit protein.
          Length = 218

 Score = 30.3 bits (65), Expect = 5.6
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 292 ITYNRHDSEDDCHILVSYFMEIFVYNNILVFSSHVEMYVK 411
           +TYN H  + +CH+    F E + +N  +V   H+E+  K
Sbjct: 111 VTYN-HSGDYECHVYRLLFFENYEHNTSVVKKIHIEVVDK 149


>L10338-1|AAA60391.1|  218|Homo sapiens sodium channel beta-1
           subunit protein.
          Length = 218

 Score = 30.3 bits (65), Expect = 5.6
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 292 ITYNRHDSEDDCHILVSYFMEIFVYNNILVFSSHVEMYVK 411
           +TYN H  + +CH+    F E + +N  +V   H+E+  K
Sbjct: 111 VTYN-HSGDYECHVYRLLFFENYEHNTSVVKKIHIEVVDK 149


>DQ677665-1|ABQ01236.1|  218|Homo sapiens sodium channel beta-1
           subunit precursor protein.
          Length = 218

 Score = 30.3 bits (65), Expect = 5.6
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 292 ITYNRHDSEDDCHILVSYFMEIFVYNNILVFSSHVEMYVK 411
           +TYN H  + +CH+    F E + +N  +V   H+E+  K
Sbjct: 111 VTYN-HSGDYECHVYRLLFFENYEHNTSVVKKIHIEVVDK 149


>BT019923-1|AAV38726.1|  218|Homo sapiens sodium channel,
           voltage-gated, type I, beta protein.
          Length = 218

 Score = 30.3 bits (65), Expect = 5.6
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 292 ITYNRHDSEDDCHILVSYFMEIFVYNNILVFSSHVEMYVK 411
           +TYN H  + +CH+    F E + +N  +V   H+E+  K
Sbjct: 111 VTYN-HSGDYECHVYRLLFFENYEHNTSVVKKIHIEVVDK 149


>BC067122-1|AAH67122.1|  218|Homo sapiens sodium channel,
           voltage-gated, type I, beta protein.
          Length = 218

 Score = 30.3 bits (65), Expect = 5.6
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 292 ITYNRHDSEDDCHILVSYFMEIFVYNNILVFSSHVEMYVK 411
           +TYN H  + +CH+    F E + +N  +V   H+E+  K
Sbjct: 111 VTYN-HSGDYECHVYRLLFFENYEHNTSVVKKIHIEVVDK 149


>BC021266-1|AAH21266.2|  186|Homo sapiens SCN1B protein protein.
          Length = 186

 Score = 30.3 bits (65), Expect = 5.6
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 292 ITYNRHDSEDDCHILVSYFMEIFVYNNILVFSSHVEMYVK 411
           +TYN H  + +CH+    F E + +N  +V   H+E+  K
Sbjct: 79  VTYN-HSGDYECHVYRLLFFENYEHNTSVVKKIHIEVVDK 117


>AY391842-1|AAR25552.1|  268|Homo sapiens voltage gated sodium
           channel beta1B subunit protein.
          Length = 268

 Score = 30.3 bits (65), Expect = 5.6
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 292 ITYNRHDSEDDCHILVSYFMEIFVYNNILVFSSHVEMYVK 411
           +TYN H  + +CH+    F E + +N  +V   H+E+  K
Sbjct: 111 VTYN-HSGDYECHVYRLLFFENYEHNTSVVKKIHIEVVDK 149


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,929,848
Number of Sequences: 237096
Number of extensions: 1600820
Number of successful extensions: 2186
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2185
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6579110070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)