Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_G13
         (614 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    25   0.44 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   5.5  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   9.6  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   9.6  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   9.6  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 334 LVSYFMEIFVYNNILVFSSHVEMYVKVIY 420
           +V+  ++ F YNN  V+ + VE Y  +IY
Sbjct: 185 VVTPIVQSFDYNNTWVYIADVEGYALIIY 213


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 168 VMQHNHHKKVLLELVYWPVLPILVH 94
           V +H +HK++ +ELV   +L   VH
Sbjct: 151 VARHFYHKELQIELVREEILFDTVH 175


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
 Frame = -3

Query: 231 TFNNILSHIIKGVVM--KKYIYLVMQHNHHKKVLL--ELVYWPVLPILVHQC 88
           TF NILSHI    V+  KK +  V     +  + L  +++Y P   ++   C
Sbjct: 262 TFENILSHINTVYVLRTKKGVMRVDASEEYSYLRLKGQMLYIPESDLVTFLC 313


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 437 PKKICLYITLTYISTWL 387
           P K CL +TL  ++T L
Sbjct: 702 PSKFCLSVTLLTVATSL 718


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
 Frame = -3

Query: 231 TFNNILSHIIKGVVM--KKYIYLVMQHNHHKKVLL--ELVYWPVLPILVHQC 88
           TF NILSHI    V+  KK +  V     +  + L  +++Y P   ++   C
Sbjct: 262 TFENILSHINTVYVLRTKKGVMRVDASEEYSYLRLKGQMLYIPESDLVTFLC 313


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,484
Number of Sequences: 438
Number of extensions: 3701
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)