Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_G12
         (395 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC029819-1|AAH29819.1|  483|Homo sapiens dual oxidase maturation...    29   5.6  
U08377-1|AAA19604.1|  951|Homo sapiens protein ( Human homolog o...    29   7.4  
BC024041-1|AAH24041.1|  547|Homo sapiens SFRS8 protein protein.        29   7.4  
BC015953-1|AAH15953.1|  760|Homo sapiens SFRS8 protein protein.        29   7.4  
BC008707-1|AAH08707.1|  760|Homo sapiens SFRS8 protein protein.        29   7.4  
AB208921-1|BAD92158.1|  636|Homo sapiens SFRS8 protein variant p...    29   7.4  

>BC029819-1|AAH29819.1|  483|Homo sapiens dual oxidase maturation
           factor 1 protein.
          Length = 483

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = -2

Query: 295 EQKLKEHGASSCISGKRGRRCCNIWHWGSVD-SISGSRARF-QLSGNSGRKHSRC 137
           E++  EH   S     RGR    +W WGS +    G RA   +L  NSG K   C
Sbjct: 396 EERWAEHTGDSP-RPLRGRGTGRLWRWGSKERRACGVRAMLPRLVSNSGLKRPSC 449


>U08377-1|AAA19604.1|  951|Homo sapiens protein ( Human homolog of
           Drosophila splicing regulator
           suppressor-of-white-apricot mRNA, complete cds. ).
          Length = 951

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 16/41 (39%), Positives = 17/41 (41%)
 Frame = -3

Query: 126 YYGNLVAGSIVSQLTAAAMVAPTP*GDAKXHP*STARPRSG 4
           YY  L AG  VS        AP P G     P +TA   SG
Sbjct: 392 YYSTLPAGVTVSNSPGVTTTAPPPPGTTPPPPPTTAETSSG 432


>BC024041-1|AAH24041.1|  547|Homo sapiens SFRS8 protein protein.
          Length = 547

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 16/41 (39%), Positives = 17/41 (41%)
 Frame = -3

Query: 126 YYGNLVAGSIVSQLTAAAMVAPTP*GDAKXHP*STARPRSG 4
           YY  L AG  VS        AP P G     P +TA   SG
Sbjct: 329 YYSTLPAGVTVSNSPGVTTTAPPPPGTTPPPPPTTAETSSG 369


>BC015953-1|AAH15953.1|  760|Homo sapiens SFRS8 protein protein.
          Length = 760

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 16/41 (39%), Positives = 17/41 (41%)
 Frame = -3

Query: 126 YYGNLVAGSIVSQLTAAAMVAPTP*GDAKXHP*STARPRSG 4
           YY  L AG  VS        AP P G     P +TA   SG
Sbjct: 392 YYSTLPAGVTVSNSPGVTTTAPPPPGTTPPPPPTTAETSSG 432


>BC008707-1|AAH08707.1|  760|Homo sapiens SFRS8 protein protein.
          Length = 760

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 16/41 (39%), Positives = 17/41 (41%)
 Frame = -3

Query: 126 YYGNLVAGSIVSQLTAAAMVAPTP*GDAKXHP*STARPRSG 4
           YY  L AG  VS        AP P G     P +TA   SG
Sbjct: 392 YYSTLPAGVTVSNSPGVTTTAPPPPGTTPPPPPTTAETSSG 432


>AB208921-1|BAD92158.1|  636|Homo sapiens SFRS8 protein variant
           protein.
          Length = 636

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 16/41 (39%), Positives = 17/41 (41%)
 Frame = -3

Query: 126 YYGNLVAGSIVSQLTAAAMVAPTP*GDAKXHP*STARPRSG 4
           YY  L AG  VS        AP P G     P +TA   SG
Sbjct: 276 YYSTLPAGVTVSNSPGVTTTAPPPPGTTPPPPPTTAETSSG 316


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,030,439
Number of Sequences: 237096
Number of extensions: 950200
Number of successful extensions: 1970
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1970
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2813442310
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)