Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_G10
         (438 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0785 + 6095041-6095135,6095455-6095760,6098458-6098554,609...    27   5.0  
04_01_0485 + 6389646-6389665,6390063-6390123,6390231-6390356,639...    27   5.0  

>07_01_0785 +
           6095041-6095135,6095455-6095760,6098458-6098554,
           6098943-6098999,6099202-6099751,6099922-6100234,
           6100245-6100335,6101002-6101469
          Length = 658

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +3

Query: 165 LIKCNKNMVMRMSMRSMQPENMQSTQSTPGVRCTQQRPEQYMQQL 299
           LI+  + + M      M+P   Q + S P   CT Q P Q   QL
Sbjct: 192 LIQYARGIFMDQHGIHMKPTLSQHSTSNPVTHCTHQHPIQVQMQL 236


>04_01_0485 +
           6389646-6389665,6390063-6390123,6390231-6390356,
           6390441-6390518,6391304-6391429,6391630-6391731,
           6391802-6391948,6392237-6392360,6393608-6393737,
           6393908-6394130
          Length = 378

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 350 RATKIKYLNILIVCLVRRRVTDHRPAEF 433
           RA  +  L I +V LVR++ T+H P  F
Sbjct: 299 RAASLDKLEIHVVGLVRQKFTNHHPTAF 326


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,680,093
Number of Sequences: 37544
Number of extensions: 103634
Number of successful extensions: 276
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 276
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)