Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_G08
         (813 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099913-13|AAC68755.1|  143|Caenorhabditis elegans Hypothetical...    32   0.56 
Z81485-4|CAB03978.1|  343|Caenorhabditis elegans Hypothetical pr...    29   5.2  
Z82265-7|CAB05171.2|  425|Caenorhabditis elegans Hypothetical pr...    28   6.9  

>AF099913-13|AAC68755.1|  143|Caenorhabditis elegans Hypothetical
           protein C29F9.13 protein.
          Length = 143

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -3

Query: 400 FCSLAITECTTNILYLFFLYHKIYCNIML*HVILSN 293
           FC+ A+ + + N   L  +Y  +YC+ +L H +L+N
Sbjct: 57  FCNPALLQLSENGKLLLTIYRNLYCSALLQHCLLNN 92


>Z81485-4|CAB03978.1|  343|Caenorhabditis elegans Hypothetical
           protein C49F5.4 protein.
          Length = 343

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = -3

Query: 445 IQNLNIYND*HY---D*FFCSLAITECTTNILYLFFLYHKIYCNIML*HVILS 296
           ++ LNI ND  Y      FC+ AIT  + N   L   Y K+Y + +L + +L+
Sbjct: 235 LRELNIQNDEFYLLSVLLFCNPAITNLSENGQLLLTSYQKMYSSALLYYCLLT 287


>Z82265-7|CAB05171.2|  425|Caenorhabditis elegans Hypothetical
           protein F02H6.4 protein.
          Length = 425

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 397 CSLAITECTTNILYLFFLYHKIYCNIML*HVIL 299
           CS A    TT I Y+    +K++CN+++  V+L
Sbjct: 350 CSYATQIRTTCIFYVILKNNKLFCNLLVESVVL 382


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,000,880
Number of Sequences: 27780
Number of extensions: 276009
Number of successful extensions: 454
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)