Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_G05
         (759 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50309-1|AAG24137.1|  335|Caenorhabditis elegans Seven tm recept...    32   0.51 
U29613-3|AAC47062.2|  483|Caenorhabditis elegans Hypothetical pr...    29   4.7  

>U50309-1|AAG24137.1|  335|Caenorhabditis elegans Seven tm receptor
           protein 129 protein.
          Length = 335

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +3

Query: 462 LYYFVSIKLISNFTYKKSCFLIWTY*IPPTTRYSTTQIHEHFHRTVSAAVYRRD 623
           LYYF  IK+ + F      F++WT  I     +   QI + F R ++  +Y  D
Sbjct: 122 LYYFDGIKIYNLFIPPTILFIVWTLSI--YFNFGPNQIKKDFFRNITMQLYDED 173


>U29613-3|AAC47062.2|  483|Caenorhabditis elegans Hypothetical
           protein K02A6.3a protein.
          Length = 483

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 156 KQYSDTVKCR*YWSLFIKKNIKRKTIELILK 248
           K    T  CR  W +F+K+N+ R  + LIL+
Sbjct: 284 KSSQSTDICRNAWDMFVKQNMDRTRVWLILR 314


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,914,897
Number of Sequences: 27780
Number of extensions: 287653
Number of successful extensions: 531
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)