Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_G01
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    27   3.9  
SPAC8F11.10c |pvg1|SPACUNK4.18|pyruvyltransferase |Schizosacchar...    26   5.1  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   6.7  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    25   8.9  
SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe...    25   8.9  

>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +2

Query: 359 FLFISH*WCNLKLSTSDFKYIFIYNYSS 442
           F++I+H WC+         Y+ IY+++S
Sbjct: 549 FMYINHGWCSYLGGLIFTSYVLIYSFAS 576


>SPAC8F11.10c |pvg1|SPACUNK4.18|pyruvyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = -3

Query: 211 FLKSGTIVIHDRIHVHV-STL 152
           FL S  +VI DR+H H+ STL
Sbjct: 326 FLASARVVITDRLHAHILSTL 346


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 425 IYNYSSPFTAIKAPCNEHSQNHNSQA 502
           I NY  PF+ + +PC++   N +S A
Sbjct: 182 ITNYDLPFSILNSPCSDLCLNSSSLA 207


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +1

Query: 478 FTKSQFS-SLIRYFPNHFSN*FTQKIHNWN*ISLSVILIC 594
           ++ S FS S I  FP H+   +  +  +W   SL   L+C
Sbjct: 24  YSLSDFSLSAISIFPTHYDQPYLNEAPSWYKYSLESGLVC 63


>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 248

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +1

Query: 580 VILICRINTILVFDRHTHKMLAIYRTHPFKVYRSWCLCFSFIVFKDTLPRF 732
           +  IC+   ++ ++ ++H + A Y TH   V   W L  + I+    LP F
Sbjct: 49  IYAICK--AVIEYNYNSHPIAAKYTTHGSIVEFIWTLIPALILILVALPSF 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,944,343
Number of Sequences: 5004
Number of extensions: 60465
Number of successful extensions: 109
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)