Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_F22
(614 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0386 + 33555682-33556344,33557138-33557299 305 1e-83
07_01_0756 + 5819367-5820038,5820847-5821005 299 1e-81
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 108 4e-24
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 47 1e-05
07_03_0681 + 20659789-20659839,20660030-20660170,20661294-206613... 30 1.7
11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509... 29 2.9
09_06_0198 - 21496692-21496991,21497111-21497258,21497341-214975... 29 2.9
11_01_0395 + 2999855-2999920,3000605-3002191 28 6.8
12_02_0387 + 18453328-18453456,18453699-18453836,18454085-184541... 27 8.9
08_01_0312 + 2764744-2767390,2767632-2767990 27 8.9
06_03_0637 - 22995831-22996667,22997200-22997694 27 8.9
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 305 bits (750), Expect = 1e-83
Identities = 140/200 (70%), Positives = 165/200 (82%)
Frame = -3
Query: 612 GRXVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKA 433
GR V+EG+ K+E IYL SLP+KE +I++ + P L DEV+KI PVQKQTRAGQRTRFKA
Sbjct: 51 GRLVKEGRFSKIEEIYLHSLPVKEHQIVETLV-PGLKDEVMKITPVQKQTRAGQRTRFKA 109
Query: 432 FVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTG 253
FV +GDNNGH+GLGVKC+KEVATAIRGAIILAKLSV+PVRRGYWGNKIG+PHTVPCKVTG
Sbjct: 110 FVVVGDNNGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGYWGNKIGQPHTVPCKVTG 169
Query: 252 KCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXX 73
KCGSVTVR++PAPRG+GIV+A VPKK+LQ AG++D +TS+RGST TLGNF
Sbjct: 170 KCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLMK 229
Query: 72 XXXYLTPDLWRDIPLTKSPY 13
+LTPD WRD KSP+
Sbjct: 230 TYGFLTPDFWRDTKFVKSPF 249
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 299 bits (733), Expect = 1e-81
Identities = 138/200 (69%), Positives = 164/200 (82%)
Frame = -3
Query: 612 GRXVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKA 433
GR V+E KI K+E IYL SLP+KE +I++ + P L DEV+KI PVQKQTRAGQRTRFKA
Sbjct: 54 GRLVKENKIHKIEEIYLHSLPVKEHQIVEQLV-PGLKDEVMKITPVQKQTRAGQRTRFKA 112
Query: 432 FVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTG 253
FV +GD +GH+GLGVKC+KEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHTVPCKVTG
Sbjct: 113 FVVVGDGDGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTG 172
Query: 252 KCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXX 73
KCGSVTVR++PAPRG+GIV+A VPKK+LQ AG++D +TS+RGST TLGNF
Sbjct: 173 KCGSVTVRMVPAPRGSGIVAAHVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLMK 232
Query: 72 XXXYLTPDLWRDIPLTKSPY 13
+LTPD WR+ K+P+
Sbjct: 233 TYGFLTPDFWRETRFIKTPF 252
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 108 bits (259), Expect = 4e-24
Identities = 58/111 (52%), Positives = 74/111 (66%), Gaps = 1/111 (0%)
Frame = -3
Query: 432 FVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG-KPHTVPCKVT 256
FV +GD + HI LGVKC+K AT + GAIILA + G I KPHTV CKV
Sbjct: 2 FVVVGDGDSHIELGVKCAK--ATTMSGAIILA---MFRCAEGATRETISRKPHTVSCKVA 56
Query: 255 GKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNF 103
K GSVTVR++ P G+ +V+ VPKK+L+ AG++D +TS+RGST TL NF
Sbjct: 57 DKYGSVTVRMMLPPMGSSVVATRVPKKVLKFAGIEDVFTSSRGSTKTLSNF 107
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/63 (33%), Positives = 39/63 (61%)
Frame = -3
Query: 504 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV 325
++ V+++ V K + G++ F+A V +GD GH+G+GV +KEV AI A + + ++
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEAITKAAMNGRRNL 230
Query: 324 LPV 316
+ V
Sbjct: 231 VTV 233
>07_03_0681 +
20659789-20659839,20660030-20660170,20661294-20661399,
20661625-20661806,20661888-20662113,20662198-20662624,
20662844-20663189,20663271-20663849
Length = 685
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +1
Query: 259 DLARDGVWLSDLVTPVTSSNW*NRQLSKDNSASNGSGDFLAALHTQTNMT 408
DL D ++ + + + W NR +++ + G G ALH TNM+
Sbjct: 354 DLDEDNRGMAQIRDDLAGAMWNNRGMAEAGGGNGGHGGHHGALHWTTNMS 403
>11_04_0439 +
17749634-17749858,17750164-17750301,17750770-17750943,
17751099-17751184,17751264-17751525,17751616-17751815,
17753631-17754086,17754198-17754474,17754694-17754828,
17754946-17755026,17756305-17756400,17756676-17756771,
17756844-17756900,17756975-17757043,17757158-17757237,
17758185-17758329,17758422-17758511,17758914-17758994,
17759103-17759198,17759279-17759335,17759417-17759461,
17759547-17759612,17760304-17760350,17762771-17762865,
17763375-17763393,17763438-17763498,17763637-17763660
Length = 1085
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 370 DFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHD 486
+F+A LHT +M V +E C LS F+ +HD
Sbjct: 655 EFIAYLHTYVDMLHKVDEIGDTMEDCYLSSPIKFVSKHD 693
>09_06_0198 -
21496692-21496991,21497111-21497258,21497341-21497578,
21497679-21497889,21497977-21498170,21498263-21498364,
21498525-21499879,21501193-21501494,21501600-21501750,
21501838-21502102,21502155-21502362,21502467-21502660,
21502749-21502850,21503481-21503680,21504010-21504846,
21505806-21506107,21506209-21506359,21506447-21506684,
21506764-21506971,21507078-21507271,21507322-21507462,
21513484-21514811,21515923-21516227,21516331-21516481,
21516570-21516807,21516881-21517088,21517197-21517366,
21517451-21517549,21517708-21519029,21521601-21521683
Length = 3314
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +1
Query: 268 RDGVWLSDLVTPVTSSNW*NRQLSKDNSASNGSGDFLAALHTQTNMTVVVANG 426
R VW++D TPVT+S+ LS NS++ D + TN+T A G
Sbjct: 105 RTVVWVADRGTPVTNSSSSAPTLSLTNSSNLVLSDADGGVRWTTNITDDAAGG 157
>11_01_0395 + 2999855-2999920,3000605-3002191
Length = 550
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = -3
Query: 564 LFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRT 445
+F +++ ++IDF L L D + I+P+ R G++T
Sbjct: 237 MFGRRVEKEKVIDFLLCSDLPDTYVSILPIIGPHRIGKKT 276
>12_02_0387 +
18453328-18453456,18453699-18453836,18454085-18454144,
18461532-18462591,18463022-18463521
Length = 628
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -2
Query: 286 KATHRPLQGHRQVWFCNSPADSCPSW 209
K H L G + W+ N PA+S SW
Sbjct: 243 KVIHLALDGIARFWYFNLPANSIYSW 268
>08_01_0312 + 2764744-2767390,2767632-2767990
Length = 1001
Score = 27.5 bits (58), Expect = 8.9
Identities = 20/42 (47%), Positives = 23/42 (54%)
Frame = -1
Query: 452 SAHVSRHLLPLATTTVILVWV*SAARKSPLPFEALLSLLSCL 327
+ HV LLPLAT T +A +PLP ALLSL S L
Sbjct: 5 AVHVLLLLLPLATIT--------SASSAPLPLLALLSLRSSL 38
>06_03_0637 - 22995831-22996667,22997200-22997694
Length = 443
Score = 27.5 bits (58), Expect = 8.9
Identities = 25/84 (29%), Positives = 34/84 (40%)
Frame = -3
Query: 369 ATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSA 190
A A++ + VL + GYWGN I P KV+ G V + G
Sbjct: 288 AAAVKLCFFASARQVLGLETGYWGNAI-----FPVKVSAAAGEVAASSVIELVGV----- 337
Query: 189 PVPKKLLQMAGVQDCYTSARGSTG 118
V + +MAG +C A G TG
Sbjct: 338 -VREAKRRMAG--ECLRWAEGRTG 358
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,180,586
Number of Sequences: 37544
Number of extensions: 458881
Number of successful extensions: 1179
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1176
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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