Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_F21
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1006.02 |||WD repeat protein, human GNB1L family|Schizosacch...    33   0.047
SPAC27F1.05c |||aminotransferase class-III, unknown specificty|S...    27   3.1  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    26   4.0  
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa...    26   5.3  
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    25   7.1  
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos...    25   9.3  

>SPAC1006.02 |||WD repeat protein, human GNB1L
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 368

 Score = 32.7 bits (71), Expect = 0.047
 Identities = 17/55 (30%), Positives = 32/55 (58%)
 Frame = -3

Query: 338 VKLKEFEGKF*KYFSSRLVVNKHKYISVCMLSCYDSKLILLYVCSL*NMNSITLE 174
           ++ +E  GK     S+ + V   KY  V + + Y+S  ++ Y+CSL N+ ++TL+
Sbjct: 181 IQPEESVGKTGSVMSTSVTVTDEKY--VLLAAGYESGHVVQYICSLENVKTVTLD 233


>SPAC27F1.05c |||aminotransferase class-III, unknown
           specificty|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 484

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -3

Query: 284 VVNKHKYISVCMLSCYDSKLILLYVCSL*NM 192
           V N ++Y+  C+  C+D+KL ++   S  N+
Sbjct: 103 VGNNNQYVWDCLQKCFDAKLYMMGAISYRNL 133


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = +1

Query: 169 EISSVIEFIFHKLHTY---NKINLES*QLNIHTDIYLCLL 279
           EI+S++ F F  LHT     K+  E   L I  +++ CLL
Sbjct: 789 EINSILNFFFCFLHTVEPSGKLTFELAFLEIFYELFNCLL 828


>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 738

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +2

Query: 77  FLKLMFTVMLHATKNDYLSFISHNILGQC 163
           F + +   ++   +NDY  ++SHN+L  C
Sbjct: 457 FTRFVNESLIPILRNDYYVYLSHNLLTVC 485


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/39 (23%), Positives = 19/39 (48%)
 Frame = +2

Query: 47  LSTISYTMTIFLKLMFTVMLHATKNDYLSFISHNILGQC 163
           L+ + Y   ++   +F      +   + SF++HN+L  C
Sbjct: 266 LANVEYLALVYPGHLFAFRYDKSLGKFCSFLNHNLLSLC 304


>SPBC215.03c |csn1||COP9/signalosome complex subunit
           Csn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -3

Query: 266 YISVCMLSCYDSKLIL 219
           YIS+C L+C+D K ++
Sbjct: 230 YISLCALACWDHKRLI 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,054,792
Number of Sequences: 5004
Number of extensions: 34941
Number of successful extensions: 110
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)