Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_F20
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    27   1.6  
SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransfer...    27   2.7  
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc...    26   4.8  
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    25   6.3  
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy...    25   8.4  

>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +1

Query: 13  NSFILIQQIDVSAEILDNVQTHLDPYDI 96
           NS   I  IDV+ E L N Q HL PY +
Sbjct: 453 NSRNFIDCIDVTREFLKNGQLHLIPYTL 480


>SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransferase
           Mam4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 236

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 432 CQFGLKFFAFVKDRFAFMGLFKIARIF-CLDFYL 334
           C FGL FF ++   ++  G F    +F  L+FY+
Sbjct: 22  CVFGLGFFVWIIYGYSIGGFFAFLSLFHLLEFYI 55


>SPAC22E12.16c |pik1||phosphatidylinositol kinase
           Pik1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -2

Query: 148 TTQLCISMNSRVPNSLDRYH 89
           T+QLC++  SR PN++  +H
Sbjct: 21  TSQLCVAYLSRYPNNIGIHH 40


>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 488 KLHSQPITGMTIFFAIFPNVSSA*NSLPSLKTDLRLWDF 372
           KL++ P  G  +  +I    SS+  S+P+  T   LW F
Sbjct: 262 KLNNVPYKGSILEVSIKNKASSSVKSIPTTPTGESLWPF 300


>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 274

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +1

Query: 364 DLKKSHKRKSV 396
           DL+KSHKRKSV
Sbjct: 154 DLRKSHKRKSV 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,254,014
Number of Sequences: 5004
Number of extensions: 44694
Number of successful extensions: 110
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)