Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_F18
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    28   1.6  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   2.8  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   3.7  
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb...    26   4.9  
SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   6.5  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   6.5  
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    25   8.6  
SPBC30B4.08 |eri1||double-strand siRNA ribonuclease|Schizosaccha...    25   8.6  

>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 171 HVVVALEREVVPGDGKGDSRQVRYEAAVHDVLP 269
           H VVAL   + P DGK +     Y++  HDV+P
Sbjct: 25  HEVVALAN-LHPEDGKDEIDSFMYQSVGHDVIP 56


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +1

Query: 571  ATMLSNTGVTWSTAIVLKAIPRIPSNLAATKASPGS--DTASANVWRRTLSPPTVTSS 738
            +++ S T ++ S  +     P + S  + T +  GS  D+A+++ W    S   +TSS
Sbjct: 883  SSLSSTTSLSTSIPVTSSVAPAVTSTGSETSSVVGSGTDSATSSSWTAETSSSAITSS 940


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +1

Query: 589 TGVTWSTAIVLKAIPRIPSNLAATKASPGSDTASANVWRRTLSPPTVTSS 738
           TG+TWST      +    +NL+A+K    S   SAN       PP   S+
Sbjct: 267 TGLTWSTKQDAVPLKTALANLSASKTQAPSSGDSANGGLPPPPPPPPPSN 316


>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 827

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 654 GHEGKPGLRHGLGERL 701
           G EGKPG+  G+GE L
Sbjct: 72  GTEGKPGVSRGVGEEL 87


>SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 256

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +3

Query: 6   TRRARTELAVPRVELRVVLADEHVPQDPQR 95
           +R++ TEL +P VE R+V A+  VP   +R
Sbjct: 213 SRKSSTELKIPPVETRIV-AEIPVPSSVKR 241


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
 Frame = +1

Query: 550 TGCTSP*ATMLSNTGVTW--STAIVLKAIPRIPS--NLAATKASPGSDTASANVWRRTLS 717
           T  TSP +T  S+T V+W  +T I   +  ++ S  ++  T  +  S T +++    T S
Sbjct: 602 TPITSPNSTSSSSTQVSWNSTTPITGTSTSKVTSSTSIPLTSTNRTSTTFTSSTSISTSS 661

Query: 718 PPTVTSS 738
             T TSS
Sbjct: 662 SSTATSS 668


>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = -1

Query: 479 PAHYRGDLVRVPLLRDTYWEFHMD--SVNVNASRFCAQGCSAIADTGTSLI 333
           P    G    + L+ D YW  H+D  SV +  +   A+ C AI  T  +++
Sbjct: 264 PVFALGRAQELLLILDEYWNNHLDLRSVPIYYASSLARKCMAIFQTYVNMM 314


>SPBC30B4.08 |eri1||double-strand siRNA
           ribonuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = -2

Query: 133 PASWRWTCRSPW 98
           P +W W C  PW
Sbjct: 194 PKNWAWACDGPW 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,744,166
Number of Sequences: 5004
Number of extensions: 52777
Number of successful extensions: 139
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)