Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_F18
         (743 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    25   0.75 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.2  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 25.0 bits (52), Expect = 0.75
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 594 GHMVHCDSAEGHPEDPV 644
           GHM H  +  GHP  P+
Sbjct: 120 GHMGHTPTPNGHPSTPI 136


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 634 RIPSNLAATKASPGSDTASANVWRRTLSPPTVTSS 738
           R  S   + KA PGS  A +   ++ LSP  + SS
Sbjct: 886 RPASQATSVKAEPGSIMAMSESSKKVLSPGELLSS 920


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 14/57 (24%), Positives = 26/57 (45%)
 Frame = -1

Query: 194  TLEGNDYVLRVAQFGHTVCLSGFMALDVPKPMGPLWILGDVFIGKYYTEFDAGNRQL 24
            T +G DY LR+    H V ++ +  ++       L I  D  +     E +AG +++
Sbjct: 1453 TFDGKDYPLRLGPCWHAV-MTTYPRINPDNHNEKLHIPKDKSVSVLSRENEAGQKEV 1508


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,817
Number of Sequences: 438
Number of extensions: 4304
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)