Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_F17
(569 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0654 - 4791998-4792085,4792250-4792674 33 0.12
10_08_0132 + 15087274-15087797,15089544-15089732,15090048-150901... 31 0.85
01_06_0575 - 30357556-30357582,30357698-30357944,30358039-303581... 30 1.5
11_01_0137 - 1137979-1138257,1138419-1138970,1139052-1139409,113... 28 4.6
02_04_0245 + 21262645-21262754,21262851-21262997,21263100-212631... 28 4.6
08_02_1084 - 24232968-24234779 28 6.0
07_03_0997 - 23203166-23203330,23203627-23203693,23203771-232038... 28 6.0
12_02_0133 - 14057469-14057497,14057516-14057581,14057770-140583... 27 8.0
>03_01_0654 - 4791998-4792085,4792250-4792674
Length = 170
Score = 33.5 bits (73), Expect = 0.12
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -2
Query: 544 QPKMAEAFQVAKKQDLPPPGGYKPIPF-KRIPAK 446
+P MA + QD PPPGG+ P+ + +RIP K
Sbjct: 79 KPGMASVKDMPVLQDGPPPGGFAPVRYARRIPTK 112
>10_08_0132 +
15087274-15087797,15089544-15089732,15090048-15090186,
15090454-15090594,15091420-15091569,15091908-15092011,
15092258-15092432,15092714-15092823,15092906-15093073,
15093180-15093345,15093771-15094049,15094445-15094543,
15094619-15094676,15095145-15095336,15095693-15095724,
15096023-15096117,15096321-15096426
Length = 908
Score = 30.7 bits (66), Expect = 0.85
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +2
Query: 338 LNLILKNSLVSYVIEIYRTNCHSNEPRKH 424
L+ +LK S VSYV E + TNC +E +H
Sbjct: 755 LDAVLKLSEVSYVEECFSTNCQPDEFNQH 783
>01_06_0575 -
30357556-30357582,30357698-30357944,30358039-30358161,
30358275-30358301,30358475-30358633,30359764-30359948,
30360225-30360293,30360432-30362354,30363018-30363339,
30363506-30363543
Length = 1039
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -3
Query: 198 TENASTNLFPPTSWSNQSSKSTMHTVTSKSGTNVLTXSCLQK*D 67
+EN S L PP+ S Q+S ST+ + K GT C+ + D
Sbjct: 290 SENVSLKLIPPSDMSVQTS-STLKDLVKKEGTPAKKSICILRND 332
>11_01_0137 -
1137979-1138257,1138419-1138970,1139052-1139409,
1139577-1139869,1140623-1140675,1140785-1140941,
1141666-1141683,1141846-1141929,1142005-1142064,
1142182-1142222,1142316-1142451
Length = 676
Score = 28.3 bits (60), Expect = 4.6
Identities = 17/80 (21%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Frame = -2
Query: 394 GSIYLYNITYKRILKDEIEMRSAKM-----AIYPALLAERDRE-YLKQLRRNRDAEAELM 233
GS L+++ YK ++KD I R A YP++ +++E + ++L++N ++
Sbjct: 210 GSYCLWSVEYKEVMKDFIVKRLKDQLFMARAHYPSIAKLKNQETFTRELKQNIQEHERML 269
Query: 232 RD-VPGWEVGTYYGERVYKL 176
D + ++ ++ +++ K+
Sbjct: 270 SDTIADADLPPFFAKKLEKM 289
>02_04_0245 +
21262645-21262754,21262851-21262997,21263100-21263156,
21263256-21263442,21264700-21264925,21265474-21266003
Length = 418
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 181 CRRVLRSKYRPPIRERLASALPQHPCSYGAAL 276
CR+ +R R + E LA ++P H YG +
Sbjct: 111 CRKEIRCLRRKDVMEALAKSVPAHTIRYGCRI 142
>08_02_1084 - 24232968-24234779
Length = 603
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -2
Query: 295 ERDREYLKQLRRNRDAEAELMRD 227
ERDR+Y ++ R+RD E E RD
Sbjct: 515 ERDRDYDRERERDRDRERERDRD 537
>07_03_0997 -
23203166-23203330,23203627-23203693,23203771-23203862,
23204820-23204956,23205050-23205116,23205212-23205278,
23205356-23205441,23206061-23206153,23206337-23206522,
23207316-23207372,23207455-23207582,23207662-23207731,
23207815-23207950,23208378-23208529,23208606-23208680,
23208765-23208929,23209063-23209128,23209229-23209333,
23209929-23210132,23210462-23211715
Length = 1123
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -2
Query: 337 MRSAKMAIYPALLAERDREYLKQL 266
+RSAK+A+ L RD Y+KQL
Sbjct: 748 LRSAKLAVEKGLAQGRDESYVKQL 771
>12_02_0133 -
14057469-14057497,14057516-14057581,14057770-14058363,
14058450-14058570,14058926-14059320,14059410-14059534,
14059646-14059876,14060012-14060484,14060587-14060693,
14060842-14061172,14061222-14061250,14061345-14061901,
14062170-14062255,14062344-14062406,14062646-14063001,
14063101-14063356
Length = 1272
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = -3
Query: 225 FPDGRSVLTTENASTNLFPPTSWSNQSSKSTMHTVTSKSGTNVL 94
F +S + A +++ PPT S + H VTS T++L
Sbjct: 490 FKKPKSCESANKAKSSILPPTEESKVVNPPVSHNVTSDRDTSIL 533
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,854,976
Number of Sequences: 37544
Number of extensions: 335805
Number of successful extensions: 967
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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