Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_F15
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    29   0.83 
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    26   4.4  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   4.4  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    26   5.9  
SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   7.8  
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac...    25   7.8  

>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 467 KLENVTTKCSHMNSNNHKRKIINDPNS 387
           K ++    C H NSN+H+ KI+ D  S
Sbjct: 109 KADSTNGFCEHNNSNDHQLKILQDKGS 135


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
 Frame = -1

Query: 635 GQRKYRDSGRGKILNRTRHISP--EPSRSLNKIK--ETRHT 525
           G   +++ G GK+  R  H+SP  E ++SL   +  E++HT
Sbjct: 88  GSYGFKEFGLGKLFIRAMHLSPTSEDAKSLKNWRGSESKHT 128


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 345  PCYYFSFFFCLNRLRVRIIDDF 410
            P  YF +FF  NR+ + ++D F
Sbjct: 1797 PKGYFGYFFKTNRVEMEVLDSF 1818


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = -1

Query: 596  LNRTRHISPEPSRSLNKIKETRHTTVERIKPPPDLLSGHMKRIKLENVTTKCSHMNSNNH 417
            LN+    S  P   +   KE   T    +    DLLS  ++RIK   +    +  +SNNH
Sbjct: 1869 LNKKFDSSARPFDEIEMEKEVL-TLKSNLAQKDDLLSSLVERIKQIEMFALKTQKDSNNH 1927

Query: 416  KRK 408
            + +
Sbjct: 1928 REE 1930


>SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 263

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/59 (23%), Positives = 26/59 (44%)
 Frame = -1

Query: 557 SLNKIKETRHTTVERIKPPPDLLSGHMKRIKLENVTTKCSHMNSNNHKRKIINDPNSEP 381
           SLN I   + T  ERI+    + S     ++ + +T    + N N    +++   +S P
Sbjct: 82  SLNYISALKETAKERIRVTVPVYSSRKSYVQTKPITHSAENENGNETSDELVFFQHSIP 140


>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 853

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 212 YIVMYQKLCNLFVLSLFNDDEVYTHNIL 129
           Y   ++KLC L VL   +DD V+  N +
Sbjct: 777 YSENFRKLCGLLVLHGTSDDNVHIENTM 804


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,528,976
Number of Sequences: 5004
Number of extensions: 49908
Number of successful extensions: 124
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)