Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_F15
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10986-12|AAA28011.1|  197|Caenorhabditis elegans Hypothetical p...    30   1.3  
AF016420-5|AAB65309.1|  651|Caenorhabditis elegans Na/ca exchang...    29   4.1  

>L10986-12|AAA28011.1|  197|Caenorhabditis elegans Hypothetical
           protein F10E9.1 protein.
          Length = 197

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -1

Query: 113 YMISVLFFCDADKKGSIKA*DICVI 39
           +++S+ FFC+AD KG  K   +C+I
Sbjct: 67  FLLSIAFFCEADGKGWKKFVTLCII 91


>AF016420-5|AAB65309.1|  651|Caenorhabditis elegans Na/ca exchangers
           protein 9 protein.
          Length = 651

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -1

Query: 452 TTKCSHMNSNNHKRKIINDPNSEPIQAKKERKVIT 348
           TT  ++ ++ N KR I+N   SEP     ERK+ T
Sbjct: 277 TTNNNNNDNKNEKRGIVNLGFSEPYSIPSERKIST 311


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,933,786
Number of Sequences: 27780
Number of extensions: 278637
Number of successful extensions: 713
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)