Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_F12
(351 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1580 - 34576595-34576723,34576905-34576981,34577058-345771... 36 0.007
05_03_0664 - 16762121-16762637,16762704-16763331,16763418-16763637 29 1.4
06_01_0810 + 6111962-6112507 28 1.8
05_01_0160 + 1081416-1081647,1081840-1082012,1082169-1082246,108... 28 2.4
08_02_1334 - 26224546-26225337 27 4.1
05_04_0355 - 20577189-20577275,20578001-20578129,20578252-205783... 27 4.1
06_03_0912 + 25896152-25896451,25896528-25897296,25897492-258976... 27 5.5
04_03_0205 + 12649724-12650191,12651493-12652025,12652114-126522... 27 5.5
02_01_0018 + 119890-120238,120331-120424,120518-121529 27 5.5
04_04_1581 - 34581455-34581466,34581525-34581616,34582584-345826... 26 7.2
04_01_0549 - 7112770-7112774,7112835-7113219,7113306-7113899 26 7.2
12_02_0145 - 14381089-14381154,14381351-14381494,14384678-14385547 26 9.6
10_07_0115 - 13008835-13008877,13009117-13010621 26 9.6
07_03_1291 + 25545749-25546262,25546989-25547669,25547693-255477... 26 9.6
06_03_0867 + 25534760-25539620,25540662-25540857,25540957-255411... 26 9.6
05_01_0294 - 2291175-2291223,2291591-2292039,2292143-2292211,229... 26 9.6
03_02_0463 - 8673313-8673639,8674040-8674126,8674710-8674790,867... 26 9.6
02_04_0221 - 21021886-21022144,21022227-21022345,21022681-210229... 26 9.6
>04_04_1580 -
34576595-34576723,34576905-34576981,34577058-34577104,
34577864-34577964,34578114-34578203,34578647-34578763,
34578835-34578992,34579562-34579843,34580367-34580667
Length = 433
Score = 36.3 bits (80), Expect = 0.007
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = -2
Query: 257 HTFVGTSVNRPLVYHH-DVQYSSKMFRKRVENLHFSLPHVPSIF 129
+T V TS PL +HH +Q S + F+ RV + + + PH+PS F
Sbjct: 78 YTMVPTSAMLPLQHHHRQLQISQENFQDRVPSNNVAAPHLPSNF 121
>05_03_0664 - 16762121-16762637,16762704-16763331,16763418-16763637
Length = 454
Score = 28.7 bits (61), Expect = 1.4
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +3
Query: 132 YGRYMRQAEMEVFNSLTEHFRAVLHVMVVDQGPIDAGADESVTAF 266
+GR+ A++ VFN+ + L +++ GP DAG + S T +
Sbjct: 256 HGRHWEGADVIVFNTYL-WWCTGLQFRILEDGPFDAGGNSSTTTW 299
>06_01_0810 + 6111962-6112507
Length = 181
Score = 28.3 bits (60), Expect = 1.8
Identities = 22/65 (33%), Positives = 25/65 (38%)
Frame = +3
Query: 135 GRYMRQAEMEVFNSLTEHFRAVLHVMVVDQGPIDAGADESVTAFHDHRSGE*QHNDLQLH 314
G MRQ E T VL D+ + +E TA RSG QLH
Sbjct: 90 GMLMRQEEQR---ETTATAATVLGAAGHDKKEVPPAEEEKKTA---RRSGFWARLQQQLH 143
Query: 315 HGKWH 329
HG WH
Sbjct: 144 HGSWH 148
>05_01_0160 +
1081416-1081647,1081840-1082012,1082169-1082246,
1082372-1082529,1082558-1082709,1083232-1083290,
1083633-1083912,1084235-1084470,1084601-1084744,
1084845-1085012
Length = 559
Score = 27.9 bits (59), Expect = 2.4
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -1
Query: 318 HDEVANRCVATRRCGDRGMRSHFRRHQR 235
H++ +R V CG + ++ +F+RHQR
Sbjct: 405 HNKSCHRHVVCDVCGTKQLKKNFKRHQR 432
>08_02_1334 - 26224546-26225337
Length = 263
Score = 27.1 bits (57), Expect = 4.1
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 262 AVTLSSAPASIGPWSTTMTCSTARKCSVREL 170
+VTL+ A++GP T + A C++R+L
Sbjct: 9 SVTLADQLAAVGPAGTAAATAAAGSCNLRDL 39
>05_04_0355 -
20577189-20577275,20578001-20578129,20578252-20578371,
20578505-20578741,20578983-20579258,20579375-20579508,
20580006-20581632
Length = 869
Score = 27.1 bits (57), Expect = 4.1
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -2
Query: 260 GHTFVGTSVNRPLVYHHDVQYSSKMFRKRVENLHFSLPHVP 138
G VG S NR + +H + S + K+++NL L H+P
Sbjct: 829 GRLIVGLS-NREIKKNHGICSSIPFYFKKIDNLIVILDHLP 868
>06_03_0912 + 25896152-25896451,25896528-25897296,25897492-25897658,
25898932-25901013,25901155-25901730,25904503-25905648,
25907056-25908693
Length = 2225
Score = 26.6 bits (56), Expect = 5.5
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 239 SVNRPLVYHHDVQYSSKMFRKRVENLHFSLPHVPSI 132
S N PL+Y H SS + K +ENL SL V +
Sbjct: 1315 SSNIPLLYKHYDGQSSSLVIKNLENLKGSLGEVQEL 1350
>04_03_0205 +
12649724-12650191,12651493-12652025,12652114-12652239,
12652625-12652724,12652880-12652899,12653035-12653137,
12653213-12653351,12653448-12653662,12653772-12654320
Length = 750
Score = 26.6 bits (56), Expect = 5.5
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = +2
Query: 80 RCYRSCRRPECPEWTSR---IWKVHEAS*NGGFQLSYGTFSSCTARHGGRPR 226
R ++ R P PE R I+++ + G Q GTF C+ HG PR
Sbjct: 376 RSFKEKRSPYAPESGVRYDGIYRIEKCWRKTGVQ---GTFKVCSDEHGDHPR 424
>02_01_0018 + 119890-120238,120331-120424,120518-121529
Length = 484
Score = 26.6 bits (56), Expect = 5.5
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +3
Query: 57 ALGDVR--RSGAIGLVEGQNALNGPPEYGRYMRQA 155
ALGD+ S +I L+E Q+ L PP R MR+A
Sbjct: 255 ALGDIAFAYSYSIILIEIQDTLRSPPAEARTMRKA 289
>04_04_1581 -
34581455-34581466,34581525-34581616,34582584-34582686,
34583761-34583837,34583913-34583959,34584494-34584594,
34584751-34584840,34585152-34585271,34586171-34586517,
34587013-34587285,34587835-34588165
Length = 530
Score = 26.2 bits (55), Expect = 7.2
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = -2
Query: 257 HTFVGTSVNRPLVYHH--DVQYSSKMFRKRVENLHFSLPHVPSIF 129
+T + T P +HH Q S + F+ V + + + PHVPS F
Sbjct: 87 YTVLPTPAVLPSHHHHHGQSQISQENFQDWVPSNNVAAPHVPSAF 131
>04_01_0549 - 7112770-7112774,7112835-7113219,7113306-7113899
Length = 327
Score = 26.2 bits (55), Expect = 7.2
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Frame = +3
Query: 63 GDVRRSGAI--GLVEGQNALNGPPEYGRYMRQAEMEVFNSLTE 185
GD R AI G + + PP+YG Y R E +L E
Sbjct: 31 GDPFRVAAISDGFDDDAGCMAAPPDYGEYHRSLEAHGARTLAE 73
>12_02_0145 - 14381089-14381154,14381351-14381494,14384678-14385547
Length = 359
Score = 25.8 bits (54), Expect = 9.6
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +3
Query: 129 EYGRYMRQ-AEMEVFNSLTEHFRAVLHVMVVDQGPIDAGADESVTAFH 269
E+ +++ Q A E L E A LH + Q + G+D+ V FH
Sbjct: 43 EHAKFLHQIAATESEGGLAEQGEAGLHGTIDRQPRLHNGSDDPVVPFH 90
>10_07_0115 - 13008835-13008877,13009117-13010621
Length = 515
Score = 25.8 bits (54), Expect = 9.6
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -1
Query: 285 RRCGDRGMRSHFRRH 241
RR G GMR+H RRH
Sbjct: 387 RRYGAAGMRAHIRRH 401
>07_03_1291 + 25545749-25546262,25546989-25547669,25547693-25547751,
25549152-25549242,25549330-25549743,25550191-25550243,
25550947-25551177,25551492-25551708,25551790-25551890,
25552446-25552532,25553536-25553676,25553839-25553961,
25554070-25554522,25554931-25555308,25555410-25556060,
25556264-25556368,25556482-25556707,25557204-25557241
Length = 1520
Score = 25.8 bits (54), Expect = 9.6
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -3
Query: 223 WSTTMTCSTARKCSVRELKTSISAC 149
W++ +C TA KC + K S+ C
Sbjct: 1306 WTSFYSCLTAVKCGKKSFKESLVRC 1330
>06_03_0867 +
25534760-25539620,25540662-25540857,25540957-25541104,
25541673-25541751,25542151-25542238,25542330-25542600,
25542676-25542718,25542801-25542904,25543374-25543790
Length = 2068
Score = 25.8 bits (54), Expect = 9.6
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 327 AICHDEVANRCVATRRCGDRGMR 259
A+C D VA+ C T CG+ R
Sbjct: 643 AVCMDGVASNCDTTEVCGNEDAR 665
>05_01_0294 -
2291175-2291223,2291591-2292039,2292143-2292211,
2292397-2292449,2292492-2294478
Length = 868
Score = 25.8 bits (54), Expect = 9.6
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 69 VRRSGAIGLVEGQNALNGPPEYGRYMR 149
+RR I L EG+ GP E+ YM+
Sbjct: 646 LRRVKKIILAEGEEQATGPKEFDEYMK 672
>03_02_0463 -
8673313-8673639,8674040-8674126,8674710-8674790,
8674896-8675048,8675129-8675185,8675293-8675569,
8675634-8675749,8676372-8676523,8676627-8676816,
8676935-8677345
Length = 616
Score = 25.8 bits (54), Expect = 9.6
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +3
Query: 114 LNGPPEYGRYMRQAEMEVFNSLTEHFRAVLHVMVVDQGPIDAG 242
L G G+ ++ EM+ L++ + H+M+VD G D G
Sbjct: 409 LAGTVRRGKTEKEDEMQEQQLLSDEKQCAEHIMLVDLGRNDVG 451
>02_04_0221 -
21021886-21022144,21022227-21022345,21022681-21022920,
21023064-21023171,21023272-21023331,21023991-21024066,
21024155-21024360,21024722-21024784,21024925-21025012,
21025515-21026015,21027206-21027603
Length = 705
Score = 25.8 bits (54), Expect = 9.6
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +2
Query: 146 EAS*NGGFQLSYGTFSSCTARHGGRPR--AY*RWCRRKCDRIPRSPQRRVATQR 301
E+S + G L TF+ H PR AY C R PRSP +R+ R
Sbjct: 195 ESSYSRGRMLPEDTFAVRPRSHSPGPRGHAYSACCARDFGFTPRSPVKRMDDPR 248
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,084,421
Number of Sequences: 37544
Number of extensions: 213247
Number of successful extensions: 576
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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