Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_F12
(351 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ... 27 2.9
Z92834-1|CAB07382.1| 564|Caenorhabditis elegans Hypothetical pr... 27 3.8
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p... 27 5.0
U40419-1|AAA81422.1| 283|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z93239-1|CAB07528.1| 512|Caenorhabditis elegans Hypothetical pr... 26 6.6
AC024791-6|AAF60660.2| 782|Caenorhabditis elegans Human spg (sp... 26 6.6
Z68337-7|CAA92742.1| 220|Caenorhabditis elegans Hypothetical pr... 26 8.7
U80444-3|AAB37789.1| 326|Caenorhabditis elegans Serpentine rece... 26 8.7
AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical ... 26 8.7
AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical ... 26 8.7
>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
protein Y32H12A.8 protein.
Length = 3901
Score = 27.5 bits (58), Expect = 2.9
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -2
Query: 272 IVECGHTFVGTSVNRPLVYHHDVQYSSKMFRKR 174
++E G V V + + Y +++ + KMFRK+
Sbjct: 2287 VIEIGRLMVEEDVRKWMEYQYEMTFVKKMFRKK 2319
>Z92834-1|CAB07382.1| 564|Caenorhabditis elegans Hypothetical
protein F39B2.1 protein.
Length = 564
Score = 27.1 bits (57), Expect = 3.8
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 251 FVGTSVNRPLVYHHDVQYSSK 189
F + +NR VYH DV YS K
Sbjct: 423 FTESELNRHAVYHSDVMYSCK 443
>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
F25H8.3 protein.
Length = 2165
Score = 26.6 bits (56), Expect = 5.0
Identities = 10/31 (32%), Positives = 14/31 (45%)
Frame = +2
Query: 89 RSCRRPECPEWTSRIWKVHEAS*NGGFQLSY 181
R C R CP W W S +GG ++ +
Sbjct: 1069 RECNRIPCPRWVYGHWSECSRSCDGGVKMRH 1099
>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
protein F25H8.3 protein.
Length = 2165
Score = 26.6 bits (56), Expect = 5.0
Identities = 10/31 (32%), Positives = 14/31 (45%)
Frame = +2
Query: 89 RSCRRPECPEWTSRIWKVHEAS*NGGFQLSY 181
R C R CP W W S +GG ++ +
Sbjct: 1069 RECNRIPCPRWVYGHWSECSRSCDGGVKMRH 1099
>U40419-1|AAA81422.1| 283|Caenorhabditis elegans Hypothetical
protein C27F2.4 protein.
Length = 283
Score = 26.6 bits (56), Expect = 5.0
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -2
Query: 272 IVECGHTFVGTSVNRPLV 219
I++ GH FVG V+RP++
Sbjct: 71 ILDAGHMFVGVDVSRPML 88
>Z93239-1|CAB07528.1| 512|Caenorhabditis elegans Hypothetical
protein H03A11.1 protein.
Length = 512
Score = 26.2 bits (55), Expect = 6.6
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 269 RSPQRRVATQRFATSSWQMALNNC 340
RSP RR +++ + WQ ++N C
Sbjct: 310 RSPYRRTYSKKNQVAEWQSSMNYC 333
>AC024791-6|AAF60660.2| 782|Caenorhabditis elegans Human spg
(spastic paraplegia)protein 7 protein.
Length = 782
Score = 26.2 bits (55), Expect = 6.6
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -2
Query: 209 DVQYSSKMFRKRVENLHFSLPHVPSIFGRSIQGILAFDKTYSTASANI 66
D+Q ++M +V S P F G +AFDK YS A+A +
Sbjct: 634 DLQKVTQMAYSQVVKFGMSEKVGPLSFETPAPGEMAFDKPYSEATAQL 681
>Z68337-7|CAA92742.1| 220|Caenorhabditis elegans Hypothetical
protein M7.10 protein.
Length = 220
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -2
Query: 170 ENLHFSLPHVPSIFGRSIQGILAFDKTYSTASANITQ 60
E HFS P P I S++ + FD + S + Q
Sbjct: 43 EGPHFSRPLPPFIANLSMEAKIEFDSVFKNKSLTLAQ 79
>U80444-3|AAB37789.1| 326|Caenorhabditis elegans Serpentine
receptor, class g (gamma)protein 14 protein.
Length = 326
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 104 PECPEWTSRIWKVHEAS*NGGFQLSY 181
P C +W I +V+ S GGF +SY
Sbjct: 167 PFCADWNIAISRVYMQSTYGGFWVSY 192
>AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical
protein C36B7.5b protein.
Length = 1148
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/45 (26%), Positives = 19/45 (42%)
Frame = -3
Query: 268 WNAVTLSSAPASIGPWSTTMTCSTARKCSVRELKTSISACLMYLP 134
W+ +L +A +G C T R C ++ + AC LP
Sbjct: 354 WSPWSLCTATCGVGEIQRNRVCQTGRNCDGPSVE--VEACKALLP 396
>AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical
protein C36B7.5a protein.
Length = 1121
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/45 (26%), Positives = 19/45 (42%)
Frame = -3
Query: 268 WNAVTLSSAPASIGPWSTTMTCSTARKCSVRELKTSISACLMYLP 134
W+ +L +A +G C T R C ++ + AC LP
Sbjct: 354 WSPWSLCTATCGVGEIQRNRVCQTGRNCDGPSVE--VEACKALLP 396
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,122,084
Number of Sequences: 27780
Number of extensions: 163749
Number of successful extensions: 435
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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