Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_F12
         (351 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   1.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   2.4  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   3.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   3.2  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    21   5.6  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    20   7.4  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    20   7.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   9.8  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    20   9.8  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    20   9.8  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 1.0
 Identities = 15/60 (25%), Positives = 28/60 (46%)
 Frame = -2

Query: 188 MFRKRVENLHFSLPHVPSIFGRSIQGILAFDKTYSTASANITQGGIGYNFVKLRMKSERG 9
           M RK++  L  ++   P+    + +  +    T++     ITQ G G  F+ ++   ERG
Sbjct: 461 MNRKQISELESNMQISPNELKPNDKSQVIKQNTWTVFRDAITQTGTGPAFLTIKEWIERG 520


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 2.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 162 PFQLASCTFHIREVHSGHSGLR 97
           P  L + T  +RE+H  ++GLR
Sbjct: 277 PEGLFASTRDLREIHLAYNGLR 298


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
 Frame = +2

Query: 68  CSQKRCYRSCRRPEC--PEWTSRIWKVHE 148
           C  K+C     RPEC  PE+   + +  E
Sbjct: 242 CRLKKCLTVGMRPECVVPEYQCAVKRKEE 270


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 106 WPSTRPIAPLL 74
           +PS RP APLL
Sbjct: 877 FPSVRPFAPLL 887


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 9/20 (45%), Positives = 11/20 (55%), Gaps = 2/20 (10%)
 Frame = +2

Query: 68  CSQKRCYRSCRRPEC--PEW 121
           C  K+C     RPEC  PE+
Sbjct: 39  CRLKKCLTVGMRPECMVPEY 58


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 6/22 (27%), Positives = 12/22 (54%)
 Frame = -1

Query: 162 PFQLASCTFHIREVHSGHSGLR 97
           P+ + +CT HI     G + ++
Sbjct: 167 PYDILNCTIHIASWSHGSNEIK 188


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +3

Query: 63  GDVRRSGAIGLVEGQNALNGPPEYGRYMRQAEMEVF 170
           GD+   G   + E   A  GP  Y R +++ E  +F
Sbjct: 55  GDIVLGGLFPVHEKGGASCGPNVYNRGVQRLEAMLF 90


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 9/35 (25%), Positives = 14/35 (40%)
 Frame = -3

Query: 229  GPWSTTMTCSTARKCSVRELKTSISACLMYLPYSG 125
            G W T    ST +K ++  L       +    Y+G
Sbjct: 1408 GDWDTAQISSTVQKYTLENLLCGSRYQIYVTAYNG 1442


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 131 FGRSIQGILAFDKTY 87
           FG S+QGI+ +   Y
Sbjct: 179 FGVSVQGIIIYRAAY 193


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 131 FGRSIQGILAFDKTY 87
           FG S+QGI+ +   Y
Sbjct: 179 FGVSVQGIIIYRAAY 193


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,688
Number of Sequences: 438
Number of extensions: 1803
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8060325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)