Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_F06
         (498 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0550 - 30151494-30151526,30151620-30151706,30152458-301526...   140   7e-34
02_02_0153 - 7258002-7258034,7258137-7258223,7258991-7259161,725...   136   9e-33
06_03_0440 + 20815528-20815653,20815742-20815912,20816501-208165...   131   3e-31
01_01_0502 - 3688940-3689149,3689180-3689251,3690028-3690064,369...    30   1.2  
01_06_0355 + 28657833-28660665,28660762-28661126                       29   2.7  
01_06_1355 + 36610390-36610479,36611906-36612063,36612144-366125...    28   4.8  
09_03_0108 + 12421719-12421749,12422794-12422892,12423370-12423890     27   8.4  
01_02_0086 - 10979236-10979396,10980288-10980798,10984446-109849...    27   8.4  

>01_06_0550 -
           30151494-30151526,30151620-30151706,30152458-30152628,
           30152716-30152757,30152856-30152939
          Length = 138

 Score =  140 bits (338), Expect = 7e-34
 Identities = 64/95 (67%), Positives = 80/95 (84%), Gaps = 1/95 (1%)
 Frame = -3

Query: 391 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVFGFKTNF 215
           T+RTRKFMTNRLL+RKQ V +V+HPG+P VSK E++EKLAK+Y+V   + +FVF F+T+F
Sbjct: 11  TLRTRKFMTNRLLSRKQFVLEVIHPGRPNVSKAELKEKLAKLYEVKDANCIFVFKFRTHF 70

Query: 214 GGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEK 110
           GGGKSTGF LIYD LD AKK+EPK+RL R+GL  K
Sbjct: 71  GGGKSTGFGLIYDNLDAAKKYEPKYRLIRNGLATK 105


>02_02_0153 -
           7258002-7258034,7258137-7258223,7258991-7259161,
           7259261-7259386
          Length = 138

 Score =  136 bits (329), Expect = 9e-33
 Identities = 63/95 (66%), Positives = 79/95 (83%), Gaps = 1/95 (1%)
 Frame = -3

Query: 391 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTP-DVVFVFGFKTNF 215
           T+RTRKFMTNRLL+RKQ V +VLHPG+  VSK +++EKLAK+Y+V   + +FVF F+T+F
Sbjct: 11  TLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHF 70

Query: 214 GGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEK 110
           GGGKSTGF LIYD LD AKK+EPK+RL R+GL  K
Sbjct: 71  GGGKSTGFGLIYDNLDAAKKYEPKYRLIRNGLATK 105


>06_03_0440 +
           20815528-20815653,20815742-20815912,20816501-20816584,
           20818831-20818917,20819044-20819076
          Length = 166

 Score =  131 bits (316), Expect = 3e-31
 Identities = 60/89 (67%), Positives = 75/89 (84%), Gaps = 1/89 (1%)
 Frame = -3

Query: 391 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVFGFKTNF 215
           T+RTRKFMTNRLL+RKQ V +VLHPG+  VSK +++EKLAK+Y+V   + +FVF F+T+F
Sbjct: 11  TLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHF 70

Query: 214 GGGKSTGFALIYDTLDLAKKFEPKHRLAR 128
           GGGKSTGF LIYD LD AKK+EPK+RL R
Sbjct: 71  GGGKSTGFGLIYDNLDAAKKYEPKYRLIR 99


>01_01_0502 -
           3688940-3689149,3689180-3689251,3690028-3690064,
           3691224-3691705
          Length = 266

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 197 WIRFDLRHTRSGQEVRAQAQVSPPRPVREEEAHA 96
           W R  +R +  G E    AQ+ PPRPV  + +HA
Sbjct: 155 WSRL-VRTSEHGDEQLTGAQLRPPRPVEADASHA 187


>01_06_0355 + 28657833-28660665,28660762-28661126
          Length = 1065

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +3

Query: 231 PNTNTTSGVTLYILASFSRISVLLTVGFPGCKTSQTICLRANNLLVMNLRVRIVAVPSLI 410
           PN    S +TL  L   + +  L  +GFP CK    +  + + LL      ++V +PS++
Sbjct: 670 PNGGVFSNITLQSLRGNTALCGLPRLGFPHCKNDHPLQGKKSRLL------KVVLIPSIL 723


>01_06_1355 +
           36610390-36610479,36611906-36612063,36612144-36612523,
           36612600-36613583,36614228-36614292,36614946-36615024,
           36615480-36615529,36616595-36616781,36617922-36617957,
           36619226-36619348,36619466-36620386,36620506-36620636
          Length = 1067

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = +3

Query: 282 SRISVLLTVGFPGCKTSQTICLRANNLLVMNLRVRIVAVPSLI 410
           +R+ V + +GF  C+  QT C R+  +++ N+     A+P+ +
Sbjct: 364 TRMLVTVGLGFSSCQPEQTQCNRSAPVVLANMNNVSFALPNTV 406


>09_03_0108 + 12421719-12421749,12422794-12422892,12423370-12423890
          Length = 216

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = -2

Query: 257 YSRCSVRIR-FQDKLRRWQINWI 192
           + RC VR+  F  KLR W ++W+
Sbjct: 134 FLRCVVRVNNFPTKLRPWDLSWL 156


>01_02_0086 -
           10979236-10979396,10980288-10980798,10984446-10984977,
           10984983-10985002
          Length = 407

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -1

Query: 336 FAMFYIQENQLSARPRSVRSSPKCTRL 256
           F++ + ++N+ +  PRS  S+PKC  L
Sbjct: 381 FSIQFYKKNETATSPRSSSSAPKCDSL 407


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,619,545
Number of Sequences: 37544
Number of extensions: 272094
Number of successful extensions: 754
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)