Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_F06
         (498 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036706-2|ABD94090.1|  131|Caenorhabditis elegans Ribosomal pro...   143   5e-35
Z29115-2|CAA82363.1|   91|Caenorhabditis elegans Hypothetical pr...    42   2e-04
AF036706-3|ABD94091.1|  204|Caenorhabditis elegans Hypothetical ...    33   0.087
Z81036-2|CAD30433.1|  431|Caenorhabditis elegans Hypothetical pr...    28   3.3  
Z81036-1|CAB02742.1|  473|Caenorhabditis elegans Hypothetical pr...    28   3.3  
AF291851-1|AAK55968.1|  103|Caenorhabditis elegans G protein sig...    28   3.3  
Z78418-2|CAB01695.1|  817|Caenorhabditis elegans Hypothetical pr...    28   4.3  
U55366-7|AAA97985.2|  323|Caenorhabditis elegans Serpentine rece...    28   4.3  
Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical p...    27   7.6  
Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical pr...    27   7.6  
U55366-8|AAZ91347.1|  287|Caenorhabditis elegans Serpentine rece...    27   7.6  
AF101319-3|AAC69355.1|  331|Caenorhabditis elegans Hypothetical ...    27   7.6  
Z81114-2|CAB03286.1|  604|Caenorhabditis elegans Hypothetical pr...    27   10.0 
Z68315-12|CAA92673.1|  345|Caenorhabditis elegans Hypothetical p...    27   10.0 
AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical ...    27   10.0 
AF016686-13|AAB66233.1|  470|Caenorhabditis elegans Hypothetical...    27   10.0 

>AF036706-2|ABD94090.1|  131|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 24 protein.
          Length = 131

 Score =  143 bits (347), Expect = 5e-35
 Identities = 64/94 (68%), Positives = 77/94 (81%)
 Frame = -3

Query: 391 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFG 212
           TIRTRK +TN+LL RKQMV +V+HPG+PTV K +IREK+AK+YK TPD V  FGF++  G
Sbjct: 6   TIRTRKVLTNKLLYRKQMVVEVIHPGRPTVPKADIREKIAKLYKTTPDTVIPFGFESKIG 65

Query: 211 GGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEK 110
           GGKS GFAL+YDT+D AKKFEPK+RL R GL  K
Sbjct: 66  GGKSKGFALVYDTIDFAKKFEPKYRLVRMGLATK 99


>Z29115-2|CAA82363.1|   91|Caenorhabditis elegans Hypothetical
           protein T26G10.3 protein.
          Length = 91

 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 16/33 (48%), Positives = 23/33 (69%)
 Frame = -3

Query: 340 MVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVV 242
           MV +V+ PG+PT  K +IREK+A  Y + PD +
Sbjct: 1   MVAEVILPGRPTTLKADIREKIANFYNINPDTM 33


>AF036706-3|ABD94091.1|  204|Caenorhabditis elegans Hypothetical
           protein T07A9.14 protein.
          Length = 204

 Score = 33.5 bits (73), Expect = 0.087
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -3

Query: 196 GFALIYDTLDLAKKFEPKH 140
           GF L+YDT D A K++P+H
Sbjct: 54  GFTLVYDTFDFANKYQPEH 72


>Z81036-2|CAD30433.1|  431|Caenorhabditis elegans Hypothetical
           protein C16C2.2b protein.
          Length = 431

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 17/52 (32%), Positives = 21/52 (40%)
 Frame = -2

Query: 275 RQNVQGYSRCSVRIRFQDKLRRWQINWIRFDLRHTRSGQEVRAQAQVSPPRP 120
           RQN QGY     R+RF  K + W       D   T   Q       + PP+P
Sbjct: 201 RQNAQGYRCLMDRLRFAIKTKPWLKALKASDTMVTWVDQRAEFDPFLHPPQP 252


>Z81036-1|CAB02742.1|  473|Caenorhabditis elegans Hypothetical
           protein C16C2.2a protein.
          Length = 473

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 17/52 (32%), Positives = 21/52 (40%)
 Frame = -2

Query: 275 RQNVQGYSRCSVRIRFQDKLRRWQINWIRFDLRHTRSGQEVRAQAQVSPPRP 120
           RQN QGY     R+RF  K + W       D   T   Q       + PP+P
Sbjct: 201 RQNAQGYRCLMDRLRFAIKTKPWLKALKASDTMVTWVDQRAEFDPFLHPPQP 252


>AF291851-1|AAK55968.1|  103|Caenorhabditis elegans G protein
           signaling regulator EAT-16 protein.
          Length = 103

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 17/52 (32%), Positives = 21/52 (40%)
 Frame = -2

Query: 275 RQNVQGYSRCSVRIRFQDKLRRWQINWIRFDLRHTRSGQEVRAQAQVSPPRP 120
           RQN QGY     R+RF  K + W       D   T   Q       + PP+P
Sbjct: 1   RQNAQGYRCLMDRLRFAIKTKPWLKALKASDTMVTWVDQRAEFDPFLHPPQP 52


>Z78418-2|CAB01695.1|  817|Caenorhabditis elegans Hypothetical
           protein F25D7.3 protein.
          Length = 817

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
 Frame = +2

Query: 215 EVCLE--TEYEHYIGSNLVHFGELLTDLGLADSWFSWM*NIANHLLARQQSVGHEFASAN 388
           E+C +  T+  H    +LVH GE      + D  FS   N+  HL  R  +    +    
Sbjct: 539 EICTKEFTQLAHLQKHHLVHTGERPHRCDICDKRFSSTSNLKTHL--RLHNGQKPYTCDV 596

Query: 389 SRCSFTHFELFSIIRRLHA 445
               FT +    + +RLHA
Sbjct: 597 CDAKFTQYVHLRLHKRLHA 615


>U55366-7|AAA97985.2|  323|Caenorhabditis elegans Serpentine
           receptor, class x protein74 protein.
          Length = 323

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = +3

Query: 279 FSRISVLLTV-GFPGCKTSQTICL-RA-NNLLVMNLRVRIVAVPSLILNY 419
           FS + V L V GF    +   ICL RA NN++V+ +   I   P+L+L+Y
Sbjct: 22  FSSLIVYLYVSGFAEKTSFNVICLVRAVNNIIVLVVNFLIFLFPTLLLSY 71


>Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical
            protein F10F2.1 protein.
          Length = 2507

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = +2

Query: 152  ELLGQIECVVDQSESS*FATSEVCLETEYEHYIGSNLVHFGELLTD 289
            +LL  IE VVD+ + +    S+ C  +E + ++G N+VH    L+D
Sbjct: 1077 DLLSGIERVVDEWKVAECGISDQCNASENQVFVG-NVVHVVSQLSD 1121


>Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical protein
            F10F2.1 protein.
          Length = 2507

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = +2

Query: 152  ELLGQIECVVDQSESS*FATSEVCLETEYEHYIGSNLVHFGELLTD 289
            +LL  IE VVD+ + +    S+ C  +E + ++G N+VH    L+D
Sbjct: 1077 DLLSGIERVVDEWKVAECGISDQCNASENQVFVG-NVVHVVSQLSD 1121


>U55366-8|AAZ91347.1|  287|Caenorhabditis elegans Serpentine
           receptor, class x protein73 protein.
          Length = 287

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
 Frame = +3

Query: 324 KTS-QTICL-RA-NNLLVMNLRVRIVAVPSLILNY 419
           KTS   ICL RA NN++V+     ++  PSL+L+Y
Sbjct: 4   KTSFNVICLTRAVNNIIVLVFNFLVITFPSLLLSY 38


>AF101319-3|AAC69355.1|  331|Caenorhabditis elegans Hypothetical
           protein K08D9.5 protein.
          Length = 331

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 4   SHHFLEAAPTLDFLXTADLLHSCSYVLY 87
           SH F+EAA  + FL + D+L   +Y  Y
Sbjct: 90  SHTFIEAAEFITFLDSNDVLFPVNYPTY 117


>Z81114-2|CAB03286.1|  604|Caenorhabditis elegans Hypothetical
           protein T04D3.2 protein.
          Length = 604

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 17/63 (26%), Positives = 31/63 (49%)
 Frame = -3

Query: 292 EIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYE 113
           +IR+++ +MY      V V  F       +     +IYD + LAKK   + +L +  L E
Sbjct: 424 KIRKEIPEMYGFIQTPVTVKTFIVQMEEERRKKTKIIYDKVQLAKKKNKEIKLKKKVLEE 483

Query: 112 KKR 104
           +++
Sbjct: 484 EEK 486


>Z68315-12|CAA92673.1|  345|Caenorhabditis elegans Hypothetical
           protein F28C6.9 protein.
          Length = 345

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 21/80 (26%), Positives = 33/80 (41%)
 Frame = +1

Query: 10  HFLEAAPTLDFLXTADLLHSCSYVLYAVCAWASSSRTGRGGLTCAWARTSWPDRVCRRSK 189
           HF+     L F     L HS   +L +  A   + R G+G L       +   R+ +  K
Sbjct: 63  HFIRIPIDLRFAFEITLTHSFDLLLISTEASRVTIRVGKGELDTLVNYKN--ARIAKYQK 120

Query: 190 RIQLICHLRSLS*NRIRTLH 249
            + L  H R  S +R+ + H
Sbjct: 121 PVSLEFHRRERSASRLESKH 140


>AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical
            protein W09B6.1a protein.
          Length = 2054

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +2

Query: 329  IANHLLARQQSVGHEFASANSRCSFTHFEL 418
            +A H+ A + S+G+ +     +C+  HF L
Sbjct: 991  VAMHISAEEGSIGNTYPLPQMKCTIDHFTL 1020


>AF016686-13|AAB66233.1|  470|Caenorhabditis elegans Hypothetical
           protein R07C3.3 protein.
          Length = 470

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 9/23 (39%), Positives = 18/23 (78%)
 Frame = -2

Query: 455 QRHVRVDAELLKIIQNE*RNSDY 387
           ++H++ D + LK+ +N+ +NSDY
Sbjct: 260 KKHLKWDLKSLKLFRNDSKNSDY 282


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,356,182
Number of Sequences: 27780
Number of extensions: 228514
Number of successful extensions: 656
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)