Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_F05
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|...    26   6.5  
SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr 1|...    25   8.6  

>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 532

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +1

Query: 472 YLAN*LSEYRK*ISPLGKLTSHIYGGNPCSAMFVP 576
           ++ + ++EY+  + PLG+    ++GG  CS  F+P
Sbjct: 180 FMQDLIAEYQVGMGPLGRSVDLLFGGGLCS--FLP 212


>SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 180 PN*FFLWDVFFICYL*CFCECEQYWYSKVTAIL 82
           PN F  W  +F CYL      E +W+  ++ IL
Sbjct: 218 PNYFCEWIEWFGCYLAAGPSAEPFWWFFLSEIL 250


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,494,087
Number of Sequences: 5004
Number of extensions: 43829
Number of successful extensions: 68
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)