Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_F03
         (827 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po...    27   2.5  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    26   5.7  
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    26   7.5  
SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyc...    26   7.5  

>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 619

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -1

Query: 827 YQLSSMKFKDPVKXGEPKIKADFDQLXEDMSAAFRNLED 711
           Y+L+SMKF++P   GE +I   ++ L + +   F  L +
Sbjct: 582 YELTSMKFENP-NEGEKEIVEHYETLHKKIEDKFHTLTE 619


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = +3

Query: 738 HIFXKLVEIGLDLRFTXFHWVLEL 809
           H++ K++E+ +DL+    +W   L
Sbjct: 360 HLYQKIIELDMDLKLITINWFFSL 383


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 720 VAESGRHIFXKLVEIGLDLRFTXFHWVLELH 812
           V ES   I+  L  +G+DL    FHW L ++
Sbjct: 643 VKESLPEIYSHLELLGVDLDAISFHWFLSVY 673


>SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 378 KRQRAPLYIFRSRCSDAFY*RTCV 307
           KR RAPLYI  + CS  ++ R+ +
Sbjct: 7   KRLRAPLYIQNAYCSKNYFYRSFI 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,083,561
Number of Sequences: 5004
Number of extensions: 58329
Number of successful extensions: 97
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)