Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_E22
         (569 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc...    27   1.5  
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy...    27   1.5  
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    26   3.4  
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    26   4.5  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   4.5  

>SPBC19G7.06 |mbx1||MADS-box transcription factor
           Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 404 PRPKTAPTSPSRGLCRIFSSNDNTASF 484
           P P TAP+SP R + RI  + +   +F
Sbjct: 5   PPPSTAPSSPRRSIQRISDAKNKALTF 31


>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 667

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 228 FLLSSHRIFYLCLWPYLQGFE 290
           F + S+R  +LC+W YLQ  +
Sbjct: 343 FAIPSNRRLFLCIWRYLQSLQ 363


>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = +2

Query: 419 APTSPSRGLCRIFSSNDNTASFTNLETIRSCWSSTVLAPRGSNAYLSFRI 568
           AP SPS  L   F     T S     ++   W S+VL+P  +     + I
Sbjct: 122 APDSPSIALNWTFWRKMKTTSIYAYASLTIAWGSSVLSPASATLAKKYHI 171


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 383 PPVNGGKPRPKTAPTSPSRGLCRIFSSNDNTASFTNL 493
           P + G +P P ++P + S        S DN  +F NL
Sbjct: 386 PSLAGNQPSPLSSPLTNSNVSPSTICSPDNNVTFVNL 422


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +2

Query: 410 PKTAPTSPSRGLCRIFSSNDNTASFTNLETIRSCWSSTVLAPRGSN 547
           P T+ +S S       +S+  T+S   L T  SC +ST + P G++
Sbjct: 360 PPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNS 405



 Score = 25.0 bits (52), Expect = 7.8
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +2

Query: 410 PKTAPTSPSRGLCRIFSSNDNTASFTNLETIRSCWSSTVLAPRGSNAYLS 559
           P T+ +S S  +    +S+ +T S     T  SC +ST + P G ++ LS
Sbjct: 139 PPTSTSSTSIPIPPTSTSSTDTNSNPLPTTSTSCTTSTSIPPTGGSSSLS 188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,324,590
Number of Sequences: 5004
Number of extensions: 47630
Number of successful extensions: 126
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)